Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022281.1-P | Field mustard | cytosol | 65.02 | 37.12 |
| AT3G18110.1 | Thale cress | plastid | 62.08 | 32.29 |
| VIT_16s0039g02570.t01 | Wine grape | plastid | 47.0 | 23.75 |
| HORVU7Hr1G033940.1 | Barley | cytosol | 38.72 | 23.05 |
| GSMUA_Achr10P... | Banana | plastid | 41.92 | 22.75 |
| Os06t0199100-01 | Rice | cytosol | 38.45 | 22.45 |
| KRH27784 | Soybean | plastid | 44.19 | 22.26 |
| Solyc03g096830.2.1 | Tomato | plastid | 42.59 | 21.63 |
| Zm00001d045014_P003 | Maize | plastid | 40.05 | 20.69 |
| KXG19540 | Sorghum | plastid | 39.65 | 20.54 |
| TraesCS7D01G162800.1 | Wheat | plastid | 38.99 | 20.17 |
| TraesCS7A01G161500.1 | Wheat | plastid | 38.85 | 20.11 |
| TraesCS7B01G066600.1 | Wheat | plastid | 38.72 | 20.07 |
| CDY28218 | Canola | cytosol | 10.41 | 8.87 |
| CDX68697 | Canola | cytosol | 10.41 | 8.87 |
| CDX92196 | Canola | cytosol | 3.2 | 7.95 |
| CDX86171 | Canola | cytosol, mitochondrion | 10.68 | 7.86 |
| CDX92197 | Canola | cytosol | 1.6 | 7.84 |
| CDX80666 | Canola | plastid | 10.01 | 7.49 |
| CDX95788 | Canola | cytosol | 3.07 | 6.42 |
Protein Annotations
| EnsemblPlants:CDX95789 | EnsemblPlantsGene:GSBRNA2T00101722001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF556 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDX95789 | ProteinID:CDX95789.1 | SEG:seg |
| TIGRFAMs:TIGR00756 | UniParc:UPI0004EE726E | MapMan:35.1 | : | : | : |
Description
BnaC05g35400D
Coordinates
chrLK031891:+:146254..149409
Molecular Weight (calculated)
84666.3 Da
IEP (calculated)
6.664
GRAVY (calculated)
-0.158
Length
749 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDVLLRGNE TRKAWALYRD MISDGHTPTH SLYEDMEELC GMNPLEISSV LVKGECFDLA ARQLKVAITN GYELQNDTLL SILGAYSSSG RHSEACELLE
101: FLKEHASGSW LLINEALIVL HCKINNIIAA LEEYFTGACV HGWSFGSSTM YESLLHCCVA NEHYAEASQV FSDLRLSGCE ASESVCKSMV GVYCKLGFPE
201: TAHQVVTQAE TKGFHFACSP TYTDIIEAYG KLKLWQKAES VVGNLRQSGR TPDLKTWNSL MTAYAECGCY ERARAIFNTM MRDGPSPSVE SINTLLHALC
301: VDGRLEELYV VVEELQDMGF KISKSSILLM LDAFARAGNI FEVKKIYNSM KAAGYLPTIR LYRMMIELLC KGKRVRDAEV MVSEMEEAGF KVELAIWNSM
401: LKMYTAIEDY KKTVRAAAND EECRNRTNTC YNASADVIDA YLRSKDYNSG IERLLEMKRE GLEPDHRIWT CFIRAASFSK EKSEFMLLLK ALQDIVERPE
501: LLVSEVDEWF EKLKPIEDNA ALNFANALLN LLWAFELRAT ASWVFQIAIK RGIFSRDVFR VADKDWGADF RRLSAGAALD ASLEGYPESP KSVVLITGTA
601: EYNGISLDKT LKACLWEMGS PFLPCKTRTG LLVAKAHSLR MWLKDSPFCF DLELKDSVSL PETSSMELID GCFIRRGLVP AFNHIKERLG GFVSPKKFSR
701: LALLPDEMRE RVIKTDIEGH RQKLEKMRKK NKGNEIVNVN TRRKFIRSK
101: FLKEHASGSW LLINEALIVL HCKINNIIAA LEEYFTGACV HGWSFGSSTM YESLLHCCVA NEHYAEASQV FSDLRLSGCE ASESVCKSMV GVYCKLGFPE
201: TAHQVVTQAE TKGFHFACSP TYTDIIEAYG KLKLWQKAES VVGNLRQSGR TPDLKTWNSL MTAYAECGCY ERARAIFNTM MRDGPSPSVE SINTLLHALC
301: VDGRLEELYV VVEELQDMGF KISKSSILLM LDAFARAGNI FEVKKIYNSM KAAGYLPTIR LYRMMIELLC KGKRVRDAEV MVSEMEEAGF KVELAIWNSM
401: LKMYTAIEDY KKTVRAAAND EECRNRTNTC YNASADVIDA YLRSKDYNSG IERLLEMKRE GLEPDHRIWT CFIRAASFSK EKSEFMLLLK ALQDIVERPE
501: LLVSEVDEWF EKLKPIEDNA ALNFANALLN LLWAFELRAT ASWVFQIAIK RGIFSRDVFR VADKDWGADF RRLSAGAALD ASLEGYPESP KSVVLITGTA
601: EYNGISLDKT LKACLWEMGS PFLPCKTRTG LLVAKAHSLR MWLKDSPFCF DLELKDSVSL PETSSMELID GCFIRRGLVP AFNHIKERLG GFVSPKKFSR
701: LALLPDEMRE RVIKTDIEGH RQKLEKMRKK NKGNEIVNVN TRRKFIRSK
0001: MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Arabidopsis Description
EMB1270Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.