Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95788 | Canola | cytosol | 26.37 | 96.65 |
| AT3G18110.1 | Thale cress | plastid | 92.3 | 84.1 |
| CDX95789 | Canola | cytosol | 37.12 | 65.02 |
| VIT_16s0039g02570.t01 | Wine grape | plastid | 69.28 | 61.34 |
| KRH27784 | Soybean | plastid | 66.84 | 58.98 |
| Solyc03g096830.2.1 | Tomato | plastid | 62.2 | 55.32 |
| HORVU7Hr1G033940.1 | Barley | cytosol | 50.84 | 53.02 |
| Os06t0199100-01 | Rice | cytosol | 50.99 | 52.14 |
| GSMUA_Achr10P... | Banana | plastid | 54.73 | 52.03 |
| Zm00001d045014_P003 | Maize | plastid | 54.27 | 49.1 |
| KXG19540 | Sorghum | plastid | 53.96 | 48.96 |
| TraesCS7B01G066600.1 | Wheat | plastid | 53.58 | 48.65 |
| TraesCS7A01G161500.1 | Wheat | plastid | 53.58 | 48.58 |
| TraesCS7D01G162800.1 | Wheat | plastid | 53.51 | 48.48 |
| CDX92197 | Canola | cytosol | 5.56 | 47.71 |
| Bra011225.1-P | Field mustard | cytosol | 12.42 | 18.54 |
| PGSC0003DMT400001470 | Potato | nucleus | 2.44 | 18.18 |
| Bra009971.1-P | Field mustard | cytosol, mitochondrion | 12.12 | 14.97 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra022281 | EnsemblPlants:Bra022281.1 | EnsemblPlants:Bra022281.1-P | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009793 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M4E0I4 | PFAM:PF01535 |
| PFAM:PF13041 | PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF556 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002547371 |
| SEG:seg | : | : | : | : | : |
Description
AT3G18110 (E=0.0) EMB1270 | EMB1270 (embryo defective 1270)
Coordinates
chrA05:+:18655537..18659897
Molecular Weight (calculated)
148246.0 Da
IEP (calculated)
7.059
GRAVY (calculated)
-0.170
Length
1312 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNKVALIRAK DWRERVKLLT DKILNLKPNQ FVADILDARL VQMTPTDYCF VVKSVGAVSW QRALEVFEWL NLRHWHSPNA RMVAAILGVL GRWNQESLAV
0101: EIFARAEPAV GDTVQVYNAM MGVYSRSGKF TKAQEMLDEM RKRGCVPDLI SFNTLINARV KSGGLTPNLA VELLDMVRNS GLRPDAITYN TLLSACSRDS
0201: NLEGAVKVFE DMEAHRCQPD LWTYNAMISV YGRCGLAAKA ESLFAELELK GYFPDAVTYN SLLYAFARER NTEKVKEVYE AMQKMGFGKD EMTYNTIIHM
0301: YGKQGQLDLA LKLYKDMKGL SGRSPDAITY TVLIDSLGKA NRTVEAAALM SEMLDVGIKP TLQTYSALIC GYAKAGKREE AEETFSCMLR SGTKPDNLAY
0401: SVMLDVLLRG NETRKAWALY RDMISDGHTP THSLYELMIL GLMNENRAED IQKTIRDMEE LCGMNPLEIS SVLVKGECFD LAARQLKVAI TNGYELQNDT
0501: LLSILGSYSS SGRHSEACEL LEFLKEHASG SRLLINEALI VLHCKVNNII AALEEYFTGA CVHGWSFGSS TMYESLLHCC VANEHYAEAS QVFSDLRLSG
0601: CEASESVGKS MVGVYCKLGF PETAHQVVTQ AETKGFHFAC SPTYTDIIEA YGKLNLWQKA ESVVGNLRQS GRTPDLKTWN SLMTAYAECG CYERARAIFN
0701: TMMRDGPSPS VESINTLLHA LCVDGRLEEL YVVVEELQDM GFKISKSSIL LMLDAFARVG NIFEVKKIYN SMKAAGYLPT IRLYRMMIEL LCKGKRVRDA
0801: EVMVSEMEEA GFKVELAIWN SMLKMYTAIE DYKKTVQVYH RIKETGLEPD ETTYNTLIIM YCRDRRPEEG YLLMQQMRNI GLEPKLDTYK SLISAFGKQK
0901: CLEQAEQLFE ELLSKGYKLD RSFYHTMMKI SRDSGSDSKA ERLLQMMKSA GIEPTLATMH LLMVSYSSSG KPQEAEKVLS NLKETEVELT TLPYSSVIDA
1001: YLRSKDYNSG IERLLEMKRE GLEPDHRIWT CFVRAASFSK DKNEVMLLLK ALQDIGFDLP IRLVVGRPEL LVSEVDEWFE KLKPIEDNAA LNFANALLNL
1101: LWAFELRATA SWVFQLAIKR GIFSRDVFRS DPVLHICCLF GIDASLEGYP ESPKSVVLIT GTAEYNGISL DKTLKACLWE MGSPFLPCKT RTGLLVAKAH
1201: SLRMWLKDSP FCFDLELKDS VSLPETSSME LIDGCFIRRG LVPAFNHIKE RLGGFVSPKK FSRLALLPDE MRERVIKTDI EGHRQKLEKM RKKNKGNEMV
1301: NVNTRRKFIR SK
0101: EIFARAEPAV GDTVQVYNAM MGVYSRSGKF TKAQEMLDEM RKRGCVPDLI SFNTLINARV KSGGLTPNLA VELLDMVRNS GLRPDAITYN TLLSACSRDS
0201: NLEGAVKVFE DMEAHRCQPD LWTYNAMISV YGRCGLAAKA ESLFAELELK GYFPDAVTYN SLLYAFARER NTEKVKEVYE AMQKMGFGKD EMTYNTIIHM
0301: YGKQGQLDLA LKLYKDMKGL SGRSPDAITY TVLIDSLGKA NRTVEAAALM SEMLDVGIKP TLQTYSALIC GYAKAGKREE AEETFSCMLR SGTKPDNLAY
0401: SVMLDVLLRG NETRKAWALY RDMISDGHTP THSLYELMIL GLMNENRAED IQKTIRDMEE LCGMNPLEIS SVLVKGECFD LAARQLKVAI TNGYELQNDT
0501: LLSILGSYSS SGRHSEACEL LEFLKEHASG SRLLINEALI VLHCKVNNII AALEEYFTGA CVHGWSFGSS TMYESLLHCC VANEHYAEAS QVFSDLRLSG
0601: CEASESVGKS MVGVYCKLGF PETAHQVVTQ AETKGFHFAC SPTYTDIIEA YGKLNLWQKA ESVVGNLRQS GRTPDLKTWN SLMTAYAECG CYERARAIFN
0701: TMMRDGPSPS VESINTLLHA LCVDGRLEEL YVVVEELQDM GFKISKSSIL LMLDAFARVG NIFEVKKIYN SMKAAGYLPT IRLYRMMIEL LCKGKRVRDA
0801: EVMVSEMEEA GFKVELAIWN SMLKMYTAIE DYKKTVQVYH RIKETGLEPD ETTYNTLIIM YCRDRRPEEG YLLMQQMRNI GLEPKLDTYK SLISAFGKQK
0901: CLEQAEQLFE ELLSKGYKLD RSFYHTMMKI SRDSGSDSKA ERLLQMMKSA GIEPTLATMH LLMVSYSSSG KPQEAEKVLS NLKETEVELT TLPYSSVIDA
1001: YLRSKDYNSG IERLLEMKRE GLEPDHRIWT CFVRAASFSK DKNEVMLLLK ALQDIGFDLP IRLVVGRPEL LVSEVDEWFE KLKPIEDNAA LNFANALLNL
1101: LWAFELRATA SWVFQLAIKR GIFSRDVFRS DPVLHICCLF GIDASLEGYP ESPKSVVLIT GTAEYNGISL DKTLKACLWE MGSPFLPCKT RTGLLVAKAH
1201: SLRMWLKDSP FCFDLELKDS VSLPETSSME LIDGCFIRRG LVPAFNHIKE RLGGFVSPKK FSRLALLPDE MRERVIKTDI EGHRQKLEKM RKKNKGNEMV
1301: NVNTRRKFIR SK
0001: MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Arabidopsis Description
EMB1270Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.