Factsheet for Bra011225.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015974.1-P
Bra016466.1-P
Bra016572.1-P
Bra025822.1-P
Bra031013.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	Bra016572.1-P	AT1G18040.1	20706207
AT4G30825.1	Bra031013.1-P	AT1G18040.1	20706207
AT4G30825.1	Bra016466.1-P	AT1G20480.1	20706207
AT4G30825.1	Bra025822.1-P	AT1G20480.1	20706207
AT4G30825.1	Bra015974.1-P	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28218	Canola	cytosol	98.52	98.52
AT4G30825.1	Thale cress	cytosol, plastid	77.59	75.44
GSMUA_Achr5P04630_001	Banana	cytosol	45.51	58.91
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	59.16	57.78
KRH63118	Soybean	plastid	55.18	56.79
PGSC0003DMT400029152	Potato	cytosol	57.22	53.68
Solyc07g005950.2.1	Tomato	cytosol	57.22	52.67
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	48.01	45.38
HORVU5Hr1G064130.1	Barley	plastid	48.01	45.33
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	47.67	45.05
TraesCS5D01G229900.1	Wheat	plastid	47.44	44.94
Os09t0423300-01	Rice	mitochondrion	48.58	44.39
EES13584	Sorghum	mitochondrion	47.44	44.27
Zm00001d024409_P001	Maize	plastid	47.44	43.39
Bra009971.1-P	Field mustard	cytosol, mitochondrion	17.29	14.31
Bra022281.1-P	Field mustard	cytosol	18.54	12.42

Protein Annotations

EnsemblPlants:Bra011225.1	EnsemblPlants:Bra011225.1-P	EnsemblPlantsGene:Bra011225	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR12683
PANTHER:PTHR12683:SF10	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0002546BC1	UniProt:M4D421	MapMan:35.1	:

Description

AT4G30825 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA01:-:3201800..3204439

Molecular Weight (calculated)

100597.0 Da

IEP (calculated)

8.173

GRAVY (calculated)

-0.285

Length

879 amino acids

Sequence
(BLAST)

001: MGSLRLSIPL DPFDSKRFHL SASRTFIIGS PISVSKIRVA RLDTEADNAI DSHSDSPSGG GRSWSSKLKG GNRGIKKDVA RKFTFRRGES NDLDLEIEGL
101: FVNNDVNYSA LKQGLSLDHY NAILKHLESC NDTNALKFFD WMRCKRKLEA NTGAYSLILR VLARREEWDR AEDLIKELCG SQSLQKSFQV FNTVIYACSK
201: KGNVKLTSKW FHMMLELGVR PNVATIGMLM GLYQKNWNVD EAEFAFSHMR MFGIVCESAY SAMITIYTRL RLYGKAEEVI ELMKEDRVRM KLENWLVMLN
301: AYSQQGKMEQ AESVLISMEE EAGFAPNVIA YNTLITGYGK VSKMEAAESL FRRFFDLGMK PDETTYRSMV EGWGRSDSYE QAKRYYQEMK RLGYKPNSSN
401: LFTLINLQAK CGDNEGAVKT IEDMVSTGCQ YPSILGIVLQ AYEKAGKIDA VPYILRGSFH NHIRSNQTSF SILAMAYIKH GMVDECLALL REKKWRDSAF
501: ESHLYHLLIC SCKESGRLDD AVKIYNHTME YNLHITSTMI DIYTSMGEFS EAEKLYSKMK SSGVVLDRIG FSIVMRMYMK AGSLEEACSV LKIMDEQKDI
601: VPDVFMFRDM LRLYQKCGLQ EKLEELYYRI RKSGIHWDQE MYNCVINCCA RALPLDELSR TFEEMIRCGF RPNTVTFNVL LDVYGKAKSF KKVNEVFLLA
701: KRHGVVDVIS YNTVIAAYGH NRDFENMSTA IRNMQFDGFS VSLEAYNSML DAYGKDKQME KFRSILKRMK NSAGKTDRYT YNIMINIYGE QGWIDEVADV
801: LRELKESGLG PDLCSYNTLI KAYGIGGMVE EAVGLVREMR VSGITPDKVT YTNLVTALRR NDEFLEAIKW SLWMKQMGI

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.