Factsheet for Bra016572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000822.1-P	nucleus
Bra001736.1-P	nucleus
Bra002046.1-P	nucleus
Bra003563.1-P	nucleus
Bra005565.1-P	nucleus
Bra008477.1-P	nucleus
Bra008973.1-P	nucleus
Bra012894.1-P	nucleus
Bra013240.1-P	nucleus
Bra016460.1-P	nucleus
Bra016654.1-P	nucleus
Bra017840.1-P	nucleus
Bra021808.1-P	nucleus
Bra022391.1-P	nucleus
Bra022897.1-P	nucleus
Bra023606.1-P	nucleus
Bra025831.1-P	nucleus
Bra026120.1-P	nucleus
Bra026756.1-P	nucleus
Bra031463.1-P	nucleus
Bra032202.1-P	nucleus
Bra033658.1-P	nucleus
Bra034198.1-P	nucleus
Bra034380.1-P	nucleus
Bra035186.1-P	nucleus
Bra036095.1-P	nucleus
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18040.1	Bra016654.1-P	AT1G15570.1	20407024
AT1G18040.1	Bra026120.1-P	AT1G15570.1	20407024
AT1G18040.1	Bra026756.1-P	AT1G15570.1	20407024
AT1G18040.1	Bra016460.1-P	AT1G20610.1	20407024
AT1G18040.1	Bra025831.1-P	AT1G20610.1	20407024
AT1G18040.1	Bra023606.1-P	AT1G44110.1	20407024
AT1G18040.1	Bra032202.1-P	AT1G44110.1	20407024
AT1G18040.1	Bra000822.1-P	AT1G80370.1	20407024
AT1G18040.1	Bra003563.1-P	AT1G80370.1	20407024
AT1G18040.1	Bra008477.1-P	AT1G80370.1	20407024
AT1G18040.1	Bra031463.1-P	AT1G80370.1	20407024
AT1G18040.1	Bra035186.1-P	AT1G80370.1	20407024
AT1G18040.1	Bra039199.1-P	AT2G23430.1	20407024
AT1G18040.1	Bra034380.1-P	AT2G27970.1	20407024
AT1G18040.1	Bra005565.1-P	AT2G32710.1	20407024
AT1G18040.1	Bra021808.1-P	AT2G32710.1	20407024
AT1G18040.1	Bra022897.1-P	AT2G32710.1	20407024
AT1G18040.1	Bra002046.1-P	AT3G11520.1	20407024
AT1G18040.1	Bra001736.1-P	AT3G19150.1	20407024
AT1G18040.1	Bra022391.1-P	AT3G19150.1	20407024
AT1G18040.1	Bra013240.1-P	AT3G24810.1	20407024
AT1G18040.1	Bra012894.1-P	AT3G50630.1	20407024
AT1G18040.1	Bra036095.1-P	AT3G50630.1	20407024
AT1G18040.1	Bra034198.1-P	AT4G03270.1	20407024
AT1G18040.1	Bra017840.1-P	AT4G37630.1	20407024
AT1G18040.1	Bra008973.1-P	AT5G11300.1	20407024
AT1G18040.1	Bra033658.1-P	AT5G43080.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96739	Canola	cytosol	99.75	99.75
Bra031013.1-P	Field mustard	cytosol	90.08	93.9
AT1G18040.1	Thale cress	cytosol	89.82	90.28
Bra015974.1-P	Field mustard	cytosol	82.44	81.61
KRH41782	Soybean	cytosol, nucleus	69.47	75.21
KRH39114	Soybean	nucleus	76.34	72.99
KRH48600	Soybean	cytosol	74.3	72.82
KRH60482	Soybean	cytosol	75.06	72.13
VIT_14s0006g02280.t01	Wine grape	cytosol	62.34	70.61
PGSC0003DMT400032131	Potato	cytosol	73.54	68.97
Solyc08g081280.2.1	Tomato	cytosol, nucleus	73.28	68.74
HORVU1Hr1G062980.2	Barley	cytosol	71.25	65.88
TraesCS1D01G245300.1	Wheat	cytosol	70.74	65.57
TraesCS1B01G256600.1	Wheat	cytosol	70.74	65.57
TraesCS1A01G245600.1	Wheat	cytosol	70.74	65.57
Zm00001d010476_P001	Maize	cytosol	68.45	62.85
EES18176	Sorghum	cytosol	68.45	62.85
GSMUA_Achr3P09020_001	Banana	cytosol	72.77	60.59
Zm00001d038109_P002	Maize	cytosol	66.16	60.47
GSMUA_Achr9P17590_001	Banana	cytosol	72.01	56.49
Bra018036.1-P	Field mustard	cytosol	35.37	47.28
Bra029917.1-P	Field mustard	cytosol	35.62	44.87
Bra015735.1-P	Field mustard	cytosol	32.32	40.58
Bra012258.1-P	Field mustard	cytosol	32.32	40.19
Bra014835.1-P	Field mustard	cytosol	30.53	39.47
Bra000077.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.79	38.78
Bra029230.1-P	Field mustard	cytosol, mitochondrion	30.79	36.89
Bra037748.1-P	Field mustard	cytosol	35.88	30.13
Bra025077.1-P	Field mustard	cytosol	30.03	27.31
Bra020977.1-P	Field mustard	cytosol	31.04	26.46
Bra038825.1-P	Field mustard	cytosol	27.74	25.17
Bra019550.1-P	Field mustard	nucleus	32.06	22.62
Bra017602.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	30.53	21.16
Bra021977.1-P	Field mustard	cytosol	18.83	20.85
Bra004236.1-P	Field mustard	nucleus	35.88	19.89

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.4	MapMan:14.6.3.1.3	MapMan:15.3.5.6.2.2	MapMan:18.4.3.1.4	Gene3D:3.30.200.20
EnsemblPlantsGene:Bra016572	EnsemblPlants:Bra016572.1	EnsemblPlants:Bra016572.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M4DJ94	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF242	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002547105	:	:

Description

AT1G18040 (E=2e-208) CDKD1;3, AT;CDCKD;3, CAK2AT | CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase

Coordinates

chrA08:+:19112535..19114729

Molecular Weight (calculated)

44737.5 Da

IEP (calculated)

10.118

GRAVY (calculated)

-0.399

Length

393 amino acids

Sequence
(BLAST)

001: MAEMEQPKKV ADRYLKQEVL GQGTYGVVFK ATDTKTGETV AIKKIRIGKH KEGVNITALR EIKMLKELKH PHIILLIDAF PHKQNLHLVF EFMETDLEGV
101: IRDSNVFLSP ADVKSYLLMT LKGLAYCHEK RVLHRDMKPN NLLIGPDGQL KLADFGLARI FGSPDRKFTH QVFARWYRAP ELLFGAKQYG AAVDVWAAGC
201: IFAELLLRRP FLQGNSDIDQ LSKIFTAFGT PKADQWPDMK NLPDYVEYQF VPAPSLRSLF PTVSEDALDL LSKLFTYDPK ARISVKQALE HRYFTSAPSP
301: TDPAKLPKPV RKQEGKASYG KHEAIKVISP PRKIRRVMPE RGRLDGMKFQ VDKDQQAPMS LDFTILAERP PNRPTITSAD RSHLKRKLDL DFQ

Best Arabidopsis Sequence Match ( AT1G18040.1 )
(BLAST)

001: MPEQPKKVAD RYLKQEVLGQ GTYGVVFKAT DTKTEQTVAI KKIRLGKQRE GVNITALREI KMLKELKHPH IILLIDAFPH KENLHLVFEF METDLEAVIR
101: DSNIFLSPAD IKSYLLMTFK GLAYCHDKWV LHRDMKPNNL LIGVDGQLKL ADFGLARIFG SPNRKFTHQV FARWYRAPEL LFGAKQYGAA VDVWAVACIF
201: AELLLRRPFL QGNSDIDQLS KIFAAFGTPK ADQWPDLTKL PDYVEYQFVP APSLRSLFPA VSDDALDLLS KMFTYDPKAR ISIKQALEHR YFTSAPAPTD
301: PAKLPKPVPK QDGKSSYGKH EAITVQSPPR KLRRVMPERG RVDSLKSHVD KDQQAPMSLD FTILAERPPN RPTITSADRS HLKRKLDLEF Q

Arabidopsis Description

CDKD-3Cyclin-dependent kinase D-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.