Factsheet for Bra013240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006242.1-P
Bra007901.1-P	endoplasmic reticulum
Bra007982.1-P
Bra007983.1-P
Bra009031.1-P	nucleus
Bra014835.1-P
Bra015471.1-P
Bra016143.1-P
Bra017840.1-P	nucleus
Bra018036.1-P
Bra028703.1-P
Bra029917.1-P
Bra030637.1-P
Bra034198.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24810.1	Bra015471.1-P	AT1G06070.1	20706207
AT3G24810.1	Bra030637.1-P	AT1G06070.1	20706207
AT3G24810.1	Bra007901.1-P	AT1G70210.1	20407024
AT3G24810.1	Bra007982.1-P	AT1G71380.1	20706207
AT3G24810.1	Bra007983.1-P	AT1G71380.1	20706207
AT3G24810.1	Bra016143.1-P	AT1G71380.1	20706207
AT3G24810.1	Bra018036.1-P	AT3G48750.1	10758489
AT3G24810.1	Bra029917.1-P	AT3G48750.1	10758489
AT3G24810.1	Bra018036.1-P	AT3G48750.1	20706207
AT3G24810.1	Bra029917.1-P	AT3G48750.1	20706207
AT3G24810.1	Bra018036.1-P	AT3G48750.1	9753775
AT3G24810.1	Bra029917.1-P	AT3G48750.1	9753775
AT3G24810.1	Bra014835.1-P	AT3G54180.1	10758489
AT3G24810.1	Bra034198.1-P	AT4G03270.1	20407024
AT3G24810.1	Bra017840.1-P	AT4G37630.1	20407024
AT3G24810.1	Bra028703.1-P	AT5G07310.1	20706207
AT3G24810.1	Bra009031.1-P	AT5G10440.1	20407024
AT3G24810.1	Bra006242.1-P	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93038	Canola	nucleus	99.5	99.5
AT3G24810.1	Thale cress	nucleus	53.77	56.61
Bra036159.1-P	Field mustard	nucleus	40.2	41.67
KRG99786	Soybean	nucleus	41.21	40.0
PGSC0003DMT400045507	Potato	nucleus	38.69	38.89
KRH46746	Soybean	nucleus	38.69	38.31
Solyc09g061280.2.1	Tomato	nucleus	36.18	38.3
Bra037459.1-P	Field mustard	nucleus	39.7	38.16
Bra022897.1-P	Field mustard	nucleus	41.21	32.8
VIT_07s0005g06340.t01	Wine grape	nucleus	35.68	32.57
Bra021808.1-P	Field mustard	nucleus	38.69	32.08
Bra005565.1-P	Field mustard	nucleus	35.68	31.42

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	EnsemblPlantsGene:Bra013240	EnsemblPlants:Bra013240.1	EnsemblPlants:Bra013240.1-P	InterPro:CDI
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0004860	GO:GO:0004861
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006464	GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0031490	GO:GO:0032877
GO:GO:0045736	UniProt:M4D9T0	PFAM:PF02234	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF23
UniParc:UPI000254082C	SEG:seg	:	:	:	:

Description

AT3G24810 (E=2e-044) ICK3, KRP5 | ICK3; cyclin-dependent protein kinase inhibitor

Coordinates

chrA03:+:19701068..19701825

Molecular Weight (calculated)

22383.3 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.725

Length

199 amino acids

Sequence
(BLAST)

001: MGRYIKKSKI AGGALPAKDI SHQTASSFRT RAAKNLALQR LRSHSTPPCV DADSFRYLQL RSRRLVKLPL LADTRKQQQK QLINSVGKRQ TTNPRANSVL
101: SSEPTNLEED CGSNLVNSGS GCSFGEKGLE FESGDRETTP CSLKRDSEEA IQSVPSHEIE DFFAFAEQQQ QRFFTEKYNF DIVSENPLPG RYEWIKVVP

Best Arabidopsis Sequence Match ( AT3G24810.1 )
(BLAST)

001: MGKYIKKSKV AGAVSVKDKS HPPALGFRTR AAAAKNLALH RLRSHSDEAD SFNYLQLRSR RLVKLPLLTN TRKQQKQQLI PSVNQCQTKN PRASSGPAKK
101: LEPDTTTEEA CGDNERISRS DCNFGDKGFD LESENRSMIS DSKSIQSEIE DFFASAEQQQ QRFFIQKYNF DIVSDNPLPG RYEWVKVMP

Arabidopsis Description

KRP5Cyclin-dependent kinase inhibitor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.