Factsheet for Solyc09g061280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068100.2.1
Solyc03g118190.2.1
Solyc05g006050.2.1	endoplasmic reticulum
Solyc05g051410.2.1	nucleus
Solyc06g053350.2.1
Solyc07g054950.1.1	nucleus
Solyc08g066330.1.1
Solyc10g074720.1.1
Solyc11g010460.1.1	nucleus
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24810.1	Solyc06g053350.2.1	AT1G06070.1	20706207
AT3G24810.1	Solyc05g006050.2.1	AT1G70210.1	20407024
AT3G24810.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT3G24810.1	Solyc08g066330.1.1	AT3G48750.1	10758489
AT3G24810.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT3G24810.1	Solyc08g066330.1.1	AT3G48750.1	9753775
AT3G24810.1	Solyc10g074720.1.1	AT3G54180.1	10758489
AT3G24810.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT3G24810.1	Solyc03g118190.2.1	AT5G07310.1	20706207
AT3G24810.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT3G24810.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT3G24810.1	Solyc02g068100.2.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045507	Potato	nucleus	79.26	75.25
CDX86277	Canola	cytosol, mitochondrion, plastid	27.66	48.15
CDY00044	Canola	nucleus	47.34	46.35
CDY19935	Canola	nucleus	47.87	45.92
Bra036159.1-P	Field mustard	nucleus	46.81	45.83
KRH46746	Soybean	nucleus	48.94	45.77
KRG99786	Soybean	nucleus	48.4	44.39
VIT_07s0005g06340.t01	Wine grape	nucleus	49.47	42.66
CDX86276	Canola	nucleus	46.28	42.03
Bra037459.1-P	Field mustard	nucleus	46.28	42.03
Solyc09g091780.2.1	Tomato	nucleus	46.28	41.43
CDX85366	Canola	nucleus	45.21	41.06
AT5G48820.2	Thale cress	endoplasmic reticulum, nucleus, plasma membrane, plastid	50.53	39.58
CDY71628	Canola	nucleus	38.83	36.68
CDX93038	Canola	nucleus	38.3	36.18
Bra013240.1-P	Field mustard	nucleus	38.3	36.18
Solyc12g098310.1.1	Tomato	nucleus	44.15	35.78
AT3G24810.1	Thale cress	nucleus	31.38	31.22

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004861	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049	GO:GO:0007050
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0071901
UniProt:K4CTW1	PFAM:PF02234	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF23	EnsemblPlantsGene:Solyc09g061280.2
EnsemblPlants:Solyc09g061280.2.1	UniParc:UPI000276BB39	SEG:seg	:	:	:

Description

Cyclin-dependent kinase inhibitor 3 [Source:Projected from Arabidopsis thaliana (AT5G48820) UniProtKB/Swiss-Prot;Acc:Q9FKB5]

Coordinates

chr9:-:58531034..58533688

Molecular Weight (calculated)

21490.2 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.766

Length

188 amino acids

Sequence
(BLAST)

001: MGKYLRKSGH VMESSSLGVR TRSTTLALQR LQSSSSSTPP PSLPSASDSC YLQLRSRRLH KPPTPIPCPN SHPHSASVGS VDEISFPDNN LHFQHTHRST
101: RESTPCSLVR EVDEMVNPGS ATRRTELNTT TQRRRNFILR NIPSAHEIEE FFTFAEQQQQ RLFMEKYNFD VVNDVPLSGR YEWIRVNH

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.