CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036159.1-P	Field mustard	nucleus	87.24	89.06
CDY00044	Canola	nucleus	83.67	85.42
CDX86277	Canola	cytosol, mitochondrion, plastid	34.18	62.04
CDX85366	Canola	nucleus	65.31	61.84
CDX86276	Canola	nucleus	64.8	61.35
AT5G48820.2	Thale cress	endoplasmic reticulum, nucleus, plasma membrane, plastid	60.71	49.58
Solyc09g061280.2.1	Tomato	nucleus	45.92	47.87
VIT_07s0005g06340.t01	Wine grape	nucleus	52.55	47.25
PGSC0003DMT400045507	Potato	nucleus	44.9	44.44
CDX93038	Canola	nucleus	40.82	40.2
CDY71628	Canola	nucleus	40.82	40.2
CDY59640	Canola	nucleus	22.45	34.92
CDY23793	Canola	nucleus	40.82	32.79
CDY12181	Canola	nucleus	38.78	31.8
CDY19160	Canola	nucleus	38.78	31.28
CDX84726	Canola	nucleus	37.76	29.96
CDX79470	Canola	nucleus	37.76	29.84

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	GO:A0A078G036	UniProt:A0A078G036	InterPro:CDI	EnsemblPlants:CDY19935
ProteinID:CDY19935	ProteinID:CDY19935.1	GO:GO:0003674	GO:GO:0004860	GO:GO:0004861	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006469	GO:GO:0007049
GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234
GO:GO:0071901	EnsemblPlantsGene:GSBRNA2T00009739001	PFAM:PF02234	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF23
UniParc:UPI0004EEDC34	SEG:seg	:	:	:	:

Description

BnaA09g03160DBnaA09g03160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G036]

Coordinates

chrLK032102:+:32558..34360

Molecular Weight (calculated)

21710.5 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.684

Length

196 amino acids

Sequence
(BLAST)

001: MGKYIKKSKI TGDIDSMEAT EATSLGVRTR AAAKTLALKR LNSSSAPDSS CYLQLRSRRL EKPPSLAEPK QTPRQVKPGI KESGSKIDSV NSSVAGSGDE
101: CFCRENSPEF QTRQSTREST PCNFVEDLET IVTPGSSTRS MRTPARDSTV PTIGELEEFF AYAEQQQQRL FMEKYNFDIV NDVPLPGGYE WVQVSP

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.