Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67944 | nucleus |
| CDX68497 | |
| CDX69832 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX73462 | |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX78253 | |
| CDX79389 | nucleus |
| CDX83047 | |
| CDX83262 | |
| CDX87018 | |
| CDX87305 | nucleus |
| CDX88666 | |
| CDX89193 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDX97915 | |
| CDY02806 | |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY11608 | endoplasmic reticulum |
| CDY12259 | |
| CDY12260 | |
| CDY14051 | |
| CDY18994 | |
| CDY19324 | |
| CDY20600 | |
| CDY20601 | |
| CDY20970 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY22369 | nucleus |
| CDY29570 | nucleus |
| CDY29942 | |
| CDY31173 | |
| CDY32714 | |
| CDY32995 | |
| CDY34673 | |
| CDY34854 | |
| CDY37592 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38664 | nucleus |
| CDY38800 | endoplasmic reticulum |
| CDY39984 | nucleus |
| CDY43865 | |
| CDY48212 | nucleus |
| CDY49278 | nucleus |
| CDY55173 | |
| CDY55831 | |
| CDY57741 | nucleus |
| CDY58566 | |
| CDY59943 | endoplasmic reticulum |
| CDY61993 | nucleus |
| CDY64339 | |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 | |
| CDY69708 | nucleus |
| CDY70684 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021808.1-P | Field mustard | nucleus | 94.24 | 95.42 |
| CDY23793 | Canola | nucleus | 73.25 | 72.95 |
| CDX79470 | Canola | nucleus | 65.02 | 63.71 |
| CDX84726 | Canola | nucleus | 64.2 | 63.16 |
| CDY12181 | Canola | nucleus | 53.91 | 54.81 |
| CDY59640 | Canola | nucleus | 27.57 | 53.17 |
| AT2G32710.1 | Thale cress | nucleus | 56.79 | 47.75 |
| Solyc09g091780.2.1 | Tomato | nucleus | 37.86 | 43.81 |
| PGSC0003DMT400076291 | Potato | nucleus | 37.04 | 43.06 |
| HORVU3Hr1G064490.1 | Barley | nucleus | 12.76 | 43.06 |
| EER91497 | Sorghum | cytosol | 32.92 | 41.88 |
| Os10t0471700-02 | Rice | nucleus | 33.33 | 41.75 |
| Zm00001d014046_P001 | Maize | nucleus | 32.92 | 41.67 |
| TraesCS1A01G151400.1 | Wheat | nucleus | 34.16 | 40.89 |
| CDX86277 | Canola | cytosol, mitochondrion, plastid | 18.11 | 40.74 |
| TraesCS1B01G168900.1 | Wheat | cytosol, nucleus, plastid | 33.74 | 40.39 |
| PGSC0003DMT400019919 | Potato | nucleus | 38.68 | 40.17 |
| Solyc12g098310.1.1 | Tomato | nucleus | 38.27 | 40.09 |
| GSMUA_Achr5P20430_001 | Banana | nucleus | 30.86 | 39.47 |
| CDY71628 | Canola | nucleus | 32.1 | 39.2 |
| GSMUA_Achr1P00900_001 | Banana | nucleus | 30.45 | 39.15 |
| CDY00044 | Canola | nucleus | 30.86 | 39.06 |
| GSMUA_Achr8P12510_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 30.86 | 39.06 |
| GSMUA_Achr11P... | Banana | nucleus | 32.1 | 39.0 |
| TraesCS1D01G148400.2 | Wheat | cytosol, nucleus, plastid | 32.51 | 38.92 |
| KRG92238 | Soybean | nucleus | 35.8 | 38.84 |
| CDY19935 | Canola | nucleus | 31.28 | 38.78 |
| Os03t0137800-01 | Rice | mitochondrion, nucleus, plastid | 34.57 | 38.01 |
| CDX93038 | Canola | nucleus | 30.86 | 37.69 |
| CDX86276 | Canola | nucleus | 32.1 | 37.68 |
| CDX85366 | Canola | nucleus | 31.69 | 37.2 |
| GSMUA_Achr11P... | Banana | nucleus | 28.4 | 36.7 |
| GSMUA_Achr1P20410_001 | Banana | nucleus | 34.57 | 36.68 |
| Zm00001d048363_P001 | Maize | nucleus | 32.1 | 36.28 |
| Zm00001d027585_P001 | Maize | nucleus | 31.69 | 36.15 |
| EER95545 | Sorghum | nucleus | 31.69 | 36.15 |
| VIT_05s0029g00040.t01 | Wine grape | nucleus | 37.86 | 35.52 |
| HORVU3Hr1G064580.1 | Barley | nucleus | 18.93 | 35.11 |
| TraesCS5A01G506500.1 | Wheat | nucleus | 30.04 | 34.93 |
| GSMUA_Achr5P12920_001 | Banana | nucleus | 31.69 | 34.84 |
| HORVU5Hr1G031690.1 | Barley | extracellular | 15.64 | 34.55 |
| GSMUA_Achr4P26490_001 | Banana | nucleus | 30.45 | 33.95 |
| GSMUA_Achr6P36640_001 | Banana | nucleus | 33.33 | 32.93 |
| GSMUA_Achr2P11790_001 | Banana | nucleus | 27.16 | 32.51 |
| TraesCS4D01G332500.1 | Wheat | nucleus | 27.57 | 30.59 |
| HORVU1Hr1G040110.3 | Barley | nucleus, plastid | 24.69 | 30.3 |
| Zm00001d032732_P002 | Maize | mitochondrion | 21.4 | 26.8 |
| GSMUA_Achr5P21770_001 | Banana | nucleus | 29.63 | 24.66 |
| HORVU4Hr1G080410.1 | Barley | nucleus | 29.22 | 19.03 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078FXN9 | UniProt:A0A078FXN9 | InterPro:CDI | EnsemblPlants:CDY19160 |
| ProteinID:CDY19160 | ProteinID:CDY19160.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0071901 | EnsemblPlantsGene:GSBRNA2T00006448001 |
| PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF41 | UniParc:UPI0004EDC09F | SEG:seg |
Description
BnaA04g19000DBnaA04g19000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXN9]
Coordinates
chrLK032092:+:630902..632780
Molecular Weight (calculated)
26899.6 Da
IEP (calculated)
10.232
GRAVY (calculated)
-1.028
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKYIKKSKL DGEAISLMDV SPGVLTRAKS LALQRRLQKP SPSSSSPSKQ KTPTDCGGGG GGGSYLQLRS RRLQKKPPIV VIRRRKKQRR VRNPNSQNQD
101: SGRGSGSGDG SRSDSVAESV VCGKAKDFNG EINMDELRNA LLTLSFNRTT RESTPCSLMR KPESISSPGS TPKLNTGVSD DRNDQREESF SGSRCHLPTT
201: PEMDEFFSGA EEEQQKQFID KYNFDPVNEQ PLPGRFEWKK IDD
101: SGRGSGSGDG SRSDSVAESV VCGKAKDFNG EINMDELRNA LLTLSFNRTT RESTPCSLMR KPESISSPGS TPKLNTGVSD DRNDQREESF SGSRCHLPTT
201: PEMDEFFSGA EEEQQKQFID KYNFDPVNEQ PLPGRFEWKK IDD
001: MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQSFNRTTRE
201: STPCSLIRRP EIMTTPGSST KLNICVSESN QREDSLSRSH RRRPTTPEMD EFFSGAEEEQ QKQFIEKYNF DPVNEQPLPG RFEWTKVDD
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQSFNRTTRE
201: STPCSLIRRP EIMTTPGSST KLNICVSESN QREDSLSRSH RRRPTTPEMD EFFSGAEEEQ QKQFIEKYNF DPVNEQPLPG RFEWTKVDD
Arabidopsis Description
KRP4Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.