CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83262	Canola	cytosol, mitochondrion	93.72	93.72
CDY70684	Canola	cytosol	43.22	83.9
CDY29942	Canola	cytosol	50.5	67.68
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	85.68	59.0
CDY10678	Canola	cytosol	53.27	54.92
AT1G46984.1	Thale cress	mitochondrion	47.24	50.81
CDY12260	Canola	cytosol	37.94	47.34
CDY12259	Canola	cytosol	38.44	47.22
CDY65287	Canola	cytosol	10.8	44.33
CDY66546	Canola	cytosol	27.39	43.6
CDY67625	Canola	mitochondrion	27.14	42.02
CDY05937	Canola	cytosol	34.67	40.83
CDY08137	Canola	cytosol	40.95	39.95
AT1G46840.1	Thale cress	cytosol	47.24	39.58
CDY65288	Canola	mitochondrion	27.39	39.49
AT1G46912.1	Thale cress	plasma membrane	30.9	39.42
CDY15344	Canola	mitochondrion	33.92	39.02
CDY08136	Canola	cytosol	39.45	38.77
CDY66545	Canola	cytosol, peroxisome, plastid	35.68	38.69
CDX70134	Canola	cytosol	38.19	38.58
CDY15358	Canola	cytosol, extracellular, plastid	13.57	38.57
CDY30661	Canola	cytosol	22.36	38.36
CDY12239	Canola	mitochondrion	26.88	38.35
CDY19088	Canola	cytosol	38.94	38.27
CDY60961	Canola	cytosol	37.94	38.04
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	38.69	38.02
CDY72410	Canola	cytosol	35.43	38.01
CDY12626	Canola	cytosol	35.68	37.97
CDY15332	Canola	cytosol	37.19	37.95
CDX98860	Canola	cytosol	38.44	37.87
CDY15336	Canola	plastid	37.19	37.76
CDY42088	Canola	cytosol	38.69	37.65
CDX79454	Canola	cytosol	28.39	37.54
CDY15359	Canola	cytosol, plastid	37.44	37.44
CDY19134	Canola	mitochondrion	35.93	37.43
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	28.64	37.13
CDY67859	Canola	cytosol, mitochondrion	35.18	37.04
CDY42089	Canola	cytosol	37.69	36.76
CDY12627	Canola	cytosol	36.68	36.68
CDY15352	Canola	mitochondrion	37.19	36.63
CDY42091	Canola	mitochondrion	28.39	36.57
CDY15324	Canola	cytosol	35.18	36.55
CDY15327	Canola	cytosol	35.18	36.36
CDY46037	Canola	extracellular	12.31	36.03
CDY70182	Canola	extracellular	12.31	36.03
CDY51358	Canola	cytosol	34.17	35.98
CDX97551	Canola	mitochondrion	35.43	35.97
CDY19137	Canola	cytosol, mitochondrion, plastid	36.68	35.96
CDY00206	Canola	nucleus	16.33	35.91
CDY15333	Canola	mitochondrion	34.42	35.68
CDY29771	Canola	cytosol, plastid	29.65	35.44
CDY60959	Canola	cytosol, mitochondrion, plastid	24.62	35.38
CDX79453	Canola	plastid	33.67	35.26
CDY52273	Canola	cytosol, plastid	26.38	35.23
CDY19132	Canola	mitochondrion	34.42	34.86
CDY15357	Canola	cytosol, nucleus, plastid	4.77	34.55
CDY72470	Canola	golgi, nucleus, plasma membrane	33.42	34.19
CDY29772	Canola	cytosol	34.67	33.82
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	36.43	32.81
CDY15326	Canola	cytosol	10.3	32.03
CDY52272	Canola	cytosol	1.76	31.82
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	10.05	31.75
CDY18160	Canola	cytosol	13.82	30.9
CDY42092	Canola	cytosol	10.55	29.79
CDY30662	Canola	extracellular, mitochondrion	10.3	29.71
CDX97874	Canola	extracellular	19.85	29.48
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	35.43	24.52
CDY19131	Canola	mitochondrion	35.18	23.53
CDY15353	Canola	cytosol	29.15	22.52
CDY26564	Canola	mitochondrion	21.36	18.56
CDY15999	Canola	cytosol, mitochondrion	25.13	15.53
CDY15342	Canola	cytosol	6.78	11.84

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078H2U5	EnsemblPlants:CDY31173	ProteinID:CDY31173	ProteinID:CDY31173.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00047269001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE4C89	SEG:seg

Description

BnaC03g47180DBnaC03g47180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2U5]

Coordinates

chrLK032268:+:97152..98348

Molecular Weight (calculated)

46615.5 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.347

Length

398 amino acids

Sequence
(BLAST)

001: MNREKYNPMN HCKIIRRRTQ SSTTSSTYVG ENPKTLPIDL IMEILKRLPT KTIAKCRCVS KQWGSLLCDP YFTKSFLTRS STRPRLLFTF EFGGKWHFFS
101: SPQPQNGDEQ VVIADYHMGF SGDWYKETCI LANGFIYLND RKMLKEKMER VPVICNPSTG QQVNLPKVLA KNKDLRSFLG YDPIENQLKV LCMTVARYRE
201: QTNSREHQVL TLGKGKPSWR KIACLFPHFP ENFGTGICIN GILYYIARSN LNTVIACFDV KYEKFRFIQI DDENSKLYWF LTLINYKGKL GAIVYDRSIN
301: GQLWVLDDPE QEKWSKHIFH LPDAAFWIMR SIWATDTGEI VWARSRWTHP FYVFYYNLET QSVRRVEIKG IEGKVLMGHY RPEAILTFTN HVENVMLL

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.