CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08136	Canola	cytosol	85.5	71.36
CDY72410	Canola	cytosol	73.96	67.39
CDY67625	Canola	mitochondrion	48.82	64.2
CDY08137	Canola	cytosol	64.79	53.68
AT3G49450.1	Thale cress	cytosol	52.07	44.0
CDY46037	Canola	extracellular	15.38	38.24
CDY70182	Canola	extracellular	15.38	38.24
CDY65287	Canola	cytosol	10.65	37.11
CDY15357	Canola	cytosol, nucleus, plastid	5.92	36.36
CDY00206	Canola	nucleus	18.93	35.36
CDY31173	Canola	cytosol, mitochondrion	40.83	34.67
CDX83262	Canola	cytosol, mitochondrion	40.53	34.42
CDY70684	Canola	cytosol	20.71	34.15
CDY65288	Canola	mitochondrion	27.81	34.06
CDY12626	Canola	cytosol	36.98	33.42
CDY66546	Canola	cytosol	24.56	33.2
CDY15326	Canola	cytosol	12.43	32.81
CDY67859	Canola	cytosol, mitochondrion	36.39	32.54
CDY42091	Canola	mitochondrion	29.59	32.36
CDY30661	Canola	cytosol	22.19	32.33
CDY12239	Canola	mitochondrion	26.33	31.9
CDY12627	Canola	cytosol	37.28	31.66
CDY19088	Canola	cytosol	37.87	31.6
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	37.57	31.36
CDY66545	Canola	cytosol, peroxisome, plastid	34.02	31.34
CDY42088	Canola	cytosol	37.57	31.05
CDX98860	Canola	cytosol	36.98	30.94
CDY15327	Canola	cytosol	35.21	30.91
CDY52273	Canola	cytosol, plastid	27.22	30.87
CDY10678	Canola	cytosol	35.21	30.83
CDY15344	Canola	mitochondrion	31.36	30.64
CDX70134	Canola	cytosol	35.5	30.46
CDY29942	Canola	cytosol	26.63	30.3
CDY19134	Canola	mitochondrion	34.02	30.1
CDY15324	Canola	cytosol	34.02	30.03
CDX79454	Canola	cytosol	26.63	29.9
CDY15336	Canola	plastid	34.62	29.85
CDY60961	Canola	cytosol	34.91	29.72
CDY30662	Canola	extracellular, mitochondrion	12.13	29.71
CDY42089	Canola	cytosol	35.8	29.66
CDY29772	Canola	cytosol	35.5	29.41
CDY15359	Canola	cytosol, plastid	34.62	29.4
CDY15332	Canola	cytosol	33.73	29.23
CDY15333	Canola	mitochondrion	32.84	28.91
CDY19137	Canola	cytosol, mitochondrion, plastid	34.62	28.82
CDY72470	Canola	golgi, nucleus, plasma membrane	33.14	28.79
CDX97551	Canola	mitochondrion	33.14	28.57
CDY29771	Canola	cytosol, plastid	28.11	28.53
CDY19132	Canola	mitochondrion	33.14	28.5
CDX79453	Canola	plastid	31.95	28.42
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	25.74	28.34
CDY18160	Canola	cytosol	14.79	28.09
CDY15352	Canola	mitochondrion	33.43	27.97
CDY51358	Canola	cytosol	30.47	27.25
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.5	27.15
CDY15358	Canola	cytosol, extracellular, plastid	11.24	27.14
CDY60959	Canola	cytosol, mitochondrion, plastid	21.89	26.71
CDY42092	Canola	cytosol	10.95	26.24
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.76	26.19
CDX97874	Canola	extracellular	20.71	26.12
CDY12259	Canola	cytosol	24.26	25.31
CDY12260	Canola	cytosol	23.08	24.45
CDY52272	Canola	cytosol	1.48	22.73
CDY15353	Canola	cytosol	29.88	19.61
CDY19131	Canola	mitochondrion	34.02	19.33
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	32.54	19.13
CDY26564	Canola	mitochondrion	19.82	14.63
CDY15999	Canola	cytosol, mitochondrion	25.74	13.51
CDY15342	Canola	cytosol	7.1	10.53

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlants:CDY05937	ProteinID:CDY05937	ProteinID:CDY05937.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00121758001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE89CE	SEG:seg

Description

BnaC08g21140D

Coordinates

chrLK031966:-:694856..696076

Molecular Weight (calculated)

38341.3 Da

IEP (calculated)

8.821

GRAVY (calculated)

0.000

Length

338 amino acids

Sequence
(BLAST)

001: MKKRKQCVSK EETCIISSTT STKETGDNYG QIPMDIILKI LSRVPAKSIA RFRCVSKDWG VTLCRPYFTD LFLKMSSLSP CLLFTFHAEG NHVPIDYPIR
101: VCVPVCGMLC TKDEMMICNP STGGFKLLPK VKTRRRRVLT YLGYDPVEKV YKVLCMTSCE RPYSQKTEQH QVLTLGTGKM NWRMIECSVL SHYPQSQHSE
201: ICIDGVLYYL ASPSTLINCK GKLGIIHPNA SGFMDGKSSG FALWVIDDIE KHTWCKNIIM FPSLWWSLVA GTRVRIIGTT GNGEILFSPC VVSIPFYIFC
301: YNMETNSIGR IEIKGFGPVM DQKIYTFLNH MENLKLIP

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.