CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15332	Canola	cytosol	84.33	82.82
CDY15352	Canola	mitochondrion	83.55	79.21
CDY60959	Canola	cytosol, mitochondrion, plastid	56.14	77.62
CDY52272	Canola	cytosol	4.44	77.27
CDY15326	Canola	cytosol	25.59	76.56
CDY19137	Canola	cytosol, mitochondrion, plastid	80.68	76.11
CDY15336	Canola	plastid	71.28	69.64
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	50.91	63.52
CDY15327	Canola	cytosol	63.45	63.12
CDY15359	Canola	cytosol, plastid	65.27	62.81
CDY19134	Canola	mitochondrion	61.36	61.52
CDY60961	Canola	cytosol	63.45	61.21
CDY15333	Canola	mitochondrion	61.36	61.2
CDX97551	Canola	mitochondrion	61.36	59.95
CDY18160	Canola	cytosol	27.68	59.55
CDY51358	Canola	cytosol	57.96	58.73
CDY19132	Canola	mitochondrion	59.79	58.27
CDY52273	Canola	cytosol, plastid	44.39	57.05
CDY15358	Canola	cytosol, extracellular, plastid	19.84	54.29
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	17.49	53.17
CDY15357	Canola	cytosol, nucleus, plastid	7.57	52.73
CDX97874	Canola	extracellular	36.03	51.49
CDY19131	Canola	mitochondrion	72.85	46.89
CDY46037	Canola	extracellular	15.93	44.85
CDY70182	Canola	extracellular	15.93	44.85
AT3G23960.1	Thale cress	cytosol	46.48	44.28
CDX79454	Canola	cytosol	34.2	43.52
CDY65288	Canola	mitochondrion	31.33	43.48
CDY12239	Canola	mitochondrion	31.59	43.37
CDY15344	Canola	mitochondrion	37.86	41.91
CDY42092	Canola	cytosol	15.4	41.84
CDY67625	Canola	mitochondrion	27.68	41.25
CDY42089	Canola	cytosol	43.6	40.93
CDY66546	Canola	cytosol	26.63	40.8
CDX98860	Canola	cytosol	42.56	40.35
CDY19088	Canola	cytosol	42.56	40.25
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.56	40.25
CDY66545	Canola	cytosol, peroxisome, plastid	37.86	39.51
CDY29771	Canola	cytosol, plastid	34.2	39.34
CDY12626	Canola	cytosol	38.12	39.04
CDX70134	Canola	cytosol	39.95	38.83
CDY42091	Canola	mitochondrion	30.81	38.19
CDY42088	Canola	cytosol	40.73	38.14
CDY67859	Canola	cytosol, mitochondrion	37.6	38.1
CDY72470	Canola	golgi, nucleus, plasma membrane	38.38	37.79
CDY12627	Canola	cytosol	39.16	37.69
CDY29772	Canola	cytosol	38.9	36.52
CDY15353	Canola	cytosol	47.78	35.53
CDX79453	Canola	plastid	35.25	35.53
CDY31173	Canola	cytosol, mitochondrion	36.55	35.18
CDY65287	Canola	cytosol	8.88	35.05
CDY08137	Canola	cytosol	37.34	35.05
CDY70684	Canola	cytosol	18.54	34.63
CDY72410	Canola	cytosol	33.42	34.5
CDX83262	Canola	cytosol, mitochondrion	35.77	34.42
CDY05937	Canola	cytosol	30.03	34.02
CDY08136	Canola	cytosol	35.25	33.33
CDY30661	Canola	cytosol	19.84	32.76
CDY30662	Canola	extracellular, mitochondrion	11.75	32.61
CDY00206	Canola	nucleus	15.4	32.6
CDY10678	Canola	cytosol	31.07	30.83
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.25	30.54
CDY29942	Canola	cytosol	23.5	30.3
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.6	29.04
CDY12259	Canola	cytosol	22.45	26.54
CDY12260	Canola	cytosol	21.93	26.33
CDY26564	Canola	mitochondrion	24.54	20.52
CDY15999	Canola	cytosol, mitochondrion	27.68	16.46
CDY15342	Canola	cytosol	8.36	14.04

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078FR16	EnsemblPlants:CDY15324	ProteinID:CDY15324	ProteinID:CDY15324.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00085600001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EE4AFD	:	:	:	:	:

Description

BnaC04g42990DBnaC04g42990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR16]

Coordinates

chrLK032054:+:40998..42149

Molecular Weight (calculated)

43471.4 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.147

Length

383 amino acids

Sequence
(BLAST)

001: MTRRHRNSLP VPDDLAMEIF TRLPSKAMAR CRCACKLWSS VLRSQDFTEL FLTKSCARPQ LLFVREDYSV REIVFITSPQ PENPEENSYV VATNHLARFP
101: RSNGFYGCTN GFFCYGANRN LKRLKRPVCV PVICNPSTAQ SLILPRLISK KRYGVQSYLG YEPMEKELKL LSMNSSLVSD EWISVEHQVL TLGTTKLSWR
201: LVECSISHCP STKWICISGV LYYAASADGD SENSMVVCFD LRSEKFSSVK LGKAMPDSTT TMVNYSGKLG LFMSGDSHDD VTRSSTSFEL WVLLDAAKQE
301: WSNHVYVLPP SWENVVAETM FIAGMVGTNE IVFSPSYQKM PYYVIYFNVE RKTITKVGIQ GLEAFQGKSF KTYLNYVENV KLL

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.