CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90932
CDX96963
CDY14922
CDY18013
CDY21896
CDY22060

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31470.1	CDX96963	AT2G03170.1	18835996
AT2G31470.1	CDY14922	AT2G03170.1	18835996
AT2G31470.1	CDX90932	AT4G02570.1	18835996
AT2G31470.1	CDY18013	AT4G02570.1	18835996
AT2G31470.1	CDY21896	AT4G02570.1	18835996
AT2G31470.1	CDY22060	AT4G02570.1	18835996

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19088	Canola	cytosol	85.43	85.43
AT2G31470.1	Thale cress	cytosol	51.85	54.26
CDY65288	Canola	mitochondrion	36.05	52.9
CDY70182	Canola	extracellular	16.79	50.0
CDY46037	Canola	extracellular	16.79	50.0
CDY66546	Canola	cytosol	30.62	49.6
CDX98860	Canola	cytosol	49.14	49.26
CDY66545	Canola	cytosol, peroxisome, plastid	44.2	48.77
CDX70134	Canola	cytosol	46.91	48.22
CDY15358	Canola	cytosol, extracellular, plastid	15.56	45.0
CDY42088	Canola	cytosol	45.43	44.99
CDY29771	Canola	cytosol, plastid	36.54	44.44
CDY67625	Canola	mitochondrion	28.15	44.36
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	33.58	44.3
CDY19134	Canola	mitochondrion	41.73	44.24
CDY15336	Canola	plastid	42.47	43.88
CDY15333	Canola	mitochondrion	41.48	43.75
CDY52273	Canola	cytosol, plastid	32.1	43.62
CDY15326	Canola	cytosol	13.58	42.97
CDY42089	Canola	cytosol	43.21	42.89
CDX79454	Canola	cytosol	31.85	42.86
CDY12239	Canola	mitochondrion	29.38	42.65
CDY19137	Canola	cytosol, mitochondrion, plastid	42.72	42.61
CDY15332	Canola	cytosol	40.99	42.56
CDY15324	Canola	cytosol	40.25	42.56
CDY12627	Canola	cytosol	41.73	42.46
CDX97551	Canola	mitochondrion	40.99	42.35
CDY15327	Canola	cytosol	40.25	42.34
CDY18160	Canola	cytosol	18.52	42.13
CDY12626	Canola	cytosol	38.27	41.44
CDY15352	Canola	mitochondrion	41.23	41.34
CDY51358	Canola	cytosol	38.02	40.74
CDY72470	Canola	golgi, nucleus, plasma membrane	39.01	40.62
CDY60961	Canola	cytosol	39.75	40.55
CDY67859	Canola	cytosol, mitochondrion	37.78	40.48
CDY15357	Canola	cytosol, nucleus, plastid	5.43	40.0
CDY15359	Canola	cytosol, plastid	39.26	39.95
CDY19132	Canola	mitochondrion	38.77	39.95
CDY60959	Canola	cytosol, mitochondrion, plastid	27.16	39.71
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	12.35	39.68
CDY15344	Canola	mitochondrion	33.83	39.6
CDY70684	Canola	cytosol	20.0	39.51
CDY00206	Canola	nucleus	17.53	39.23
CDX83262	Canola	cytosol, mitochondrion	38.52	39.2
CDY65287	Canola	cytosol	9.38	39.18
CDY42091	Canola	mitochondrion	29.88	39.16
CDY42092	Canola	cytosol	13.58	39.01
CDY31173	Canola	cytosol, mitochondrion	38.02	38.69
CDY08136	Canola	cytosol	38.52	38.52
CDX79453	Canola	plastid	36.05	38.42
CDY08137	Canola	cytosol	38.52	38.24
CDY72410	Canola	cytosol	34.81	38.01
CDY29772	Canola	cytosol	38.27	37.99
CDY05937	Canola	cytosol	31.36	37.57
CDY10678	Canola	cytosol	35.56	37.31
CDY30662	Canola	extracellular, mitochondrion	12.35	36.23
CDX97874	Canola	extracellular	23.95	36.19
CDY30661	Canola	cytosol	20.0	34.91
CDY29942	Canola	cytosol	25.19	34.34
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	36.05	33.03
CDY52272	Canola	cytosol	1.73	31.82
CDY12259	Canola	cytosol	25.19	31.48
CDY12260	Canola	cytosol	24.2	30.72
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.26	27.65
CDY19131	Canola	mitochondrion	40.49	27.56
CDY15353	Canola	cytosol	31.85	25.05
CDY26564	Canola	mitochondrion	21.98	19.43
CDY15999	Canola	cytosol, mitochondrion	25.19	15.84
CDY15342	Canola	cytosol	7.9	14.04

Protein Annotations

EnsemblPlants:CDY67066	EnsemblPlantsGene:GSBRNA2T00058749001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF00646	PFAM:PF08268	ProteinID:CDY67066	ProteinID:CDY67066.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDF67C	UniProt:A0A078JMR6	MapMan:35.1	:

Description

BnaUnng01840DBnaUnng01840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMR6]

Coordinates

chrLK035721:+:1531..2748

Molecular Weight (calculated)

46547.4 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.218

Length

405 amino acids

Sequence
(BLAST)

001: MKPSRHNVSE DRQTILRRHS RYSLPIPIDL IIEILLRLSL KSIARCRCVS KLLASIVVRP DFTDSFLASS LARPQVLFAC RKQNKNDVMF YFSTPQPQNP
101: DENSSSIVAN YHMSFPFDSL SLCSAVSGFV CIEDLRIIKG SKTPRPVWMI CNPSTGQSFT LPKMESRKRI WIRCFLGYDP IEKQHKVLAM TWGHTKAEDH
201: QVLTLLGGTD KLAWRRIECS IPQYGSPGPH NICINGVLYF KAQANRSSNG QDIIVCFDVR SEKYNFVKVM KRVVHPAAAL VNYNGKLASV ISQSPSHYIF
301: DTTRSFEMWV LQDSEKHEWS KHIYIFPPLW KHISGGQNLY FVGVTGADEI VLCPKSLFRE PFYVYYYNLK RGTIRRVEIQ GLERLEGSYR VDTFLNHVED
401: VKIVK

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.