CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05937	Canola	cytosol	71.36	85.5
Bra017983.1-P	Field mustard	cytosol	83.7	83.7
CDY72410	Canola	cytosol	69.63	76.01
CDY67625	Canola	mitochondrion	45.93	72.37
CDY08137	Canola	cytosol	67.65	67.16
AT3G49450.1	Thale cress	cytosol	52.1	52.75
CDY65288	Canola	mitochondrion	27.65	40.58
CDY00206	Canola	nucleus	18.02	40.33
CDY65287	Canola	cytosol	9.63	40.21
CDY12239	Canola	mitochondrion	27.65	40.14
CDY70684	Canola	cytosol	20.25	40.0
CDY66546	Canola	cytosol	24.44	39.6
CDY31173	Canola	cytosol, mitochondrion	38.77	39.45
CDY12626	Canola	cytosol	36.05	39.04
CDY70182	Canola	extracellular	13.09	38.97
CDY46037	Canola	extracellular	13.09	38.97
CDX83262	Canola	cytosol, mitochondrion	38.27	38.94
CDX98860	Canola	cytosol	38.52	38.61
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	38.52	38.52
CDY66545	Canola	cytosol, peroxisome, plastid	34.07	37.6
CDY67859	Canola	cytosol, mitochondrion	35.06	37.57
CDY42091	Canola	mitochondrion	28.64	37.54
CDY19088	Canola	cytosol	37.53	37.53
CDX79454	Canola	cytosol	27.65	37.21
CDY52273	Canola	cytosol, plastid	26.91	36.58
CDY15357	Canola	cytosol, nucleus, plastid	4.94	36.36
CDX70134	Canola	cytosol	35.31	36.29
CDY42088	Canola	cytosol	36.54	36.19
CDY12627	Canola	cytosol	35.56	36.18
CDY15344	Canola	mitochondrion	30.86	36.13
CDY15327	Canola	cytosol	34.07	35.84
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	27.16	35.83
CDY42089	Canola	cytosol	35.8	35.54
CDY19134	Canola	mitochondrion	33.33	35.34
CDY15324	Canola	cytosol	33.33	35.25
CDY15336	Canola	plastid	34.07	35.2
CDY72470	Canola	golgi, nucleus, plasma membrane	33.58	34.96
CDY15359	Canola	cytosol, plastid	34.32	34.92
CDY60961	Canola	cytosol	34.07	34.76
CDY29772	Canola	cytosol	34.81	34.56
CDY30661	Canola	cytosol	19.75	34.48
CDY10678	Canola	cytosol	32.84	34.46
CDY18160	Canola	cytosol	15.06	34.27
CDX79453	Canola	plastid	32.1	34.21
CDY42092	Canola	cytosol	11.85	34.04
CDY29942	Canola	cytosol	24.94	34.01
CDY19137	Canola	cytosol, mitochondrion, plastid	33.83	33.74
CDY15326	Canola	cytosol	10.62	33.59
CDY15333	Canola	mitochondrion	31.85	33.59
CDY15332	Canola	cytosol	32.35	33.59
CDY15358	Canola	cytosol, extracellular, plastid	11.6	33.57
CDY15352	Canola	mitochondrion	33.09	33.17
CDY51358	Canola	cytosol	30.86	33.07
CDX97551	Canola	mitochondrion	31.85	32.91
CDY19132	Canola	mitochondrion	31.85	32.82
CDY29771	Canola	cytosol, plastid	26.91	32.73
CDX97874	Canola	extracellular	21.48	32.46
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.31	32.35
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.38	30.16
CDY30662	Canola	extracellular, mitochondrion	10.12	29.71
CDY60959	Canola	cytosol, mitochondrion, plastid	20.25	29.6
CDY12259	Canola	cytosol	23.21	29.01
CDY12260	Canola	cytosol	22.22	28.21
CDY52272	Canola	cytosol	1.48	27.27
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	32.35	22.78
CDY15353	Canola	cytosol	28.64	22.52
CDY19131	Canola	mitochondrion	32.84	22.35
CDY26564	Canola	mitochondrion	19.26	17.03
CDY15999	Canola	cytosol, mitochondrion	23.7	14.91
CDY15342	Canola	cytosol	6.67	11.84

Protein Annotations

MapMan:35.1	UniProt:A0A078F472	EnsemblPlants:CDY08136	ProteinID:CDY08136	ProteinID:CDY08136.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00125427001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDD97E	:

Description

BnaA06g15900DBnaA06g15900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F472]

Coordinates

chrLK031983:-:617085..618302

Molecular Weight (calculated)

46055.7 Da

IEP (calculated)

9.510

GRAVY (calculated)

-0.055

Length

405 amino acids

Sequence
(BLAST)

001: MKKRKQCVSK EETRIISSIT STKASGENYG QIPMDIILKI LSRVPAKSIA RFRCVSKDWG VTLCRPYFTD LFLKMSSLSP CLLFTFHAEG KWSFFSLPES
101: MLISDQKSSR VVDSLSHVPI DYPIRVCVPV GGLLCTKDEW NLSGKKDARM MICNPSTGGF KLLPKVKTRR RRVLTYLGYD PVEKVYKVLC MTSCERPYSP
201: KTEQHQVLTL GTGKMNWRMI ECSVSHYPQS HHNETCIDGV LYYLAVGSGC WKTSMIVCFD IRSEKLKFIV DEAFKDIKSP STLINYKGKL GIIHHNAPGL
301: MDGKSSGFAL WVIDDMEKHI WCKNIVMFPS LWWNLVAGTR VRIIGTTGNG EILFSPCVVS IPFYIFCYNM ETNAIRRVEI KGFGPVMGQK IYTFLNHMEN
401: LKLVP

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.