Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67625 | Canola | mitochondrion | 34.75 | 54.09 |
| CDY08136 | Canola | cytosol | 52.75 | 52.1 |
| CDY05937 | Canola | cytosol | 44.0 | 52.07 |
| CDY08137 | Canola | cytosol | 52.75 | 51.72 |
| Bra017982.1-P | Field mustard | cytosol | 52.75 | 51.72 |
| Bra017983.1-P | Field mustard | cytosol | 49.5 | 48.89 |
| CDY72410 | Canola | cytosol | 43.75 | 47.17 |
| AT2G31470.1 | Thale cress | cytosol | 37.5 | 38.76 |
| AT3G23960.1 | Thale cress | cytosol | 35.75 | 35.57 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 34.25 | 34.95 |
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 25.25 | 34.01 |
| AT1G46984.1 | Thale cress | mitochondrion | 31.25 | 33.78 |
| AT3G61340.2 | Thale cress | cytosol | 36.25 | 33.33 |
| AT3G47020.1 | Thale cress | cytosol | 25.25 | 32.27 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 31.0 | 29.95 |
| AT1G53790.2 | Thale cress | cytosol | 33.75 | 29.28 |
| AT1G46912.1 | Thale cress | plasma membrane | 22.5 | 28.85 |
| AT1G46840.1 | Thale cress | cytosol | 31.5 | 26.53 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | ArrayExpress:AT3G49450 | EnsemblPlantsGene:AT3G49450 | RefSeq:AT3G49450 | TAIR:AT3G49450 |
| RefSeq:AT3G49450-TAIR-G | EnsemblPlants:AT3G49450.1 | TAIR:AT3G49450.1 | Unigene:At.62413 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | PFAM:PF00646 | PFAM:PF08268 | PO:PO:0000084 | PO:PO:0001017 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI00000A033E | : | : | : | : |
Description
F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
Coordinates
chr3:-:18337305..18338542
Molecular Weight (calculated)
45724.7 Da
IEP (calculated)
9.131
GRAVY (calculated)
-0.121
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.