Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30662 | Canola | extracellular, mitochondrion | 16.7 | 55.8 |
| CDY30661 | Canola | cytosol | 26.25 | 52.16 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 47.94 | 50.0 |
| AT2G31470.1 | Thale cress | cytosol | 33.41 | 39.79 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 33.41 | 39.29 |
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 24.95 | 38.72 |
| AT3G47020.1 | Thale cress | cytosol | 24.3 | 35.78 |
| AT3G23960.1 | Thale cress | cytosol | 30.37 | 34.83 |
| AT3G49450.1 | Thale cress | cytosol | 29.28 | 33.75 |
| AT1G46984.1 | Thale cress | mitochondrion | 26.9 | 33.51 |
| AT3G61340.2 | Thale cress | cytosol | 31.45 | 33.33 |
| AT1G46912.1 | Thale cress | plasma membrane | 20.82 | 30.77 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 26.46 | 29.47 |
| AT1G46840.1 | Thale cress | cytosol | 27.55 | 26.74 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:841816 | ProteinID:AEE33002.1 | ProteinID:ANM60490.1 | ArrayExpress:AT1G53790 |
| EnsemblPlantsGene:AT1G53790 | RefSeq:AT1G53790 | TAIR:AT1G53790 | RefSeq:AT1G53790-TAIR-G | EnsemblPlants:AT1G53790.2 | TAIR:AT1G53790.2 |
| Unigene:At.66811 | UniProt:B3H7F2 | ncoils:Coil | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | RefSeq:NP_001117485.1 |
| RefSeq:NP_001322774.1 | PFAM:PF00646 | PFAM:PF08268 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF47 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI0001739064 | SEG:seg | : | : | : | : |
Description
F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
Coordinates
chr1:-:20079081..20081464
Molecular Weight (calculated)
53036.5 Da
IEP (calculated)
7.305
GRAVY (calculated)
-0.111
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLMTDYDRG FNTFSPQGRL F
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLMTDYDRG FNTFSPQGRL F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.