Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 1
- nucleus 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31173 | Canola | cytosol, mitochondrion | 50.81 | 47.24 |
| CDX83262 | Canola | cytosol, mitochondrion | 49.73 | 46.23 |
| Bra033850.1-P | Field mustard | cytosol | 34.59 | 45.71 |
| CDY70684 | Canola | cytosol | 24.86 | 44.88 |
| AT2G31470.1 | Thale cress | cytosol | 40.27 | 38.5 |
| AT1G46840.1 | Thale cress | cytosol | 49.19 | 38.32 |
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 30.27 | 37.71 |
| CDY29942 | Canola | cytosol | 30.0 | 37.37 |
| AT1G46912.1 | Thale cress | plasma membrane | 31.35 | 37.18 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 39.19 | 36.99 |
| AT3G23960.1 | Thale cress | cytosol | 39.73 | 36.57 |
| CDY12259 | Canola | cytosol | 29.19 | 33.33 |
| CDY12260 | Canola | cytosol | 28.11 | 32.6 |
| AT3G49450.1 | Thale cress | cytosol | 33.78 | 31.25 |
| Bra000514.1-P | Field mustard | cytosol, nucleus, plasma membrane | 47.57 | 30.45 |
| AT3G61340.2 | Thale cress | cytosol | 34.59 | 29.43 |
| AT3G47020.1 | Thale cress | cytosol | 24.59 | 29.07 |
| AT1G53790.2 | Thale cress | cytosol | 33.51 | 26.9 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 30.0 | 26.81 |
| Bra023245.1-P | Field mustard | cytosol | 27.84 | 21.33 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:841120 | ProteinID:AAG50624.1 | ProteinID:AEE32133.1 | ArrayExpress:AT1G46984 |
| EnsemblPlantsGene:AT1G46984 | RefSeq:AT1G46984 | TAIR:AT1G46984 | RefSeq:AT1G46984-TAIR-G | EnsemblPlants:AT1G46984.1 | TAIR:AT1G46984.1 |
| Unigene:At.52046 | ncoils:Coil | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | RefSeq:NP_175150.1 | PFAM:PF00646 |
| PFAM:PF08268 | PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9C627 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A604D | : | : | : |
Description
Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
Coordinates
chr1:+:17274722..17275834
Molecular Weight (calculated)
43132.2 Da
IEP (calculated)
9.849
GRAVY (calculated)
-0.277
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.