Factsheet for Bra023245.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12259	Canola	cytosol	54.04	80.56
CDY12260	Canola	cytosol	52.38	79.31
Bra019597.1-P	Field mustard	nucleus	12.63	33.7
AT1G46984.1	Thale cress	mitochondrion	21.33	27.84
Bra033908.1-P	Field mustard	cytosol	21.95	27.46
Bra021784.1-P	Field mustard	plastid	21.74	26.99
Bra021782.1-P	Field mustard	plastid	21.33	26.68
Bra021767.1-P	Field mustard	cytosol	20.91	25.44
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.43	25.43
Bra033850.1-P	Field mustard	cytosol	14.08	24.29
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	19.88	24.12
Bra021785.1-P	Field mustard	mitochondrion	19.05	24.08
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	19.88	24.06
Bra021772.1-P	Field mustard	plastid	19.25	23.85
Bra023809.1-P	Field mustard	mitochondrion	16.15	23.78
Bra021730.1-P	Field mustard	cytosol	19.88	23.7
Bra039989.1-P	Field mustard	cytosol	19.67	23.57
Bra021783.1-P	Field mustard	mitochondrion	19.05	23.53
Bra022877.1-P	Field mustard	cytosol	19.05	23.47
Bra034016.1-P	Field mustard	cytosol	19.25	23.13
Bra017982.1-P	Field mustard	cytosol	19.46	23.04
Bra005628.1-P	Field mustard	cytosol	19.25	22.79
Bra021769.1-P	Field mustard	cytosol	19.05	22.72
Bra027364.1-P	Field mustard	mitochondrion	18.43	22.7
Bra036902.1-P	Field mustard	cytosol	19.05	22.49
Bra021786.1-P	Field mustard	mitochondrion	17.18	22.49
Bra009129.1-P	Field mustard	cytosol	18.22	22.17
Bra036901.1-P	Field mustard	cytosol	19.05	21.9
Bra005629.1-P	Field mustard	cytosol	16.56	21.0
AT1G46840.1	Thale cress	cytosol	20.5	20.84
Bra017983.1-P	Field mustard	cytosol	17.18	20.49
Bra021789.1-P	Field mustard	cytosol	20.08	19.02
AT1G46912.1	Thale cress	plasma membrane	10.35	16.03
Bra021780.1-P	Field mustard	mitochondrion	18.84	15.29
Bra021777.1-P	Field mustard	cytosol	20.29	10.71
Bra005631.1-P	Field mustard	cytosol	2.69	9.09
Bra022876.1-P	Field mustard	cytosol	2.69	8.39

Protein Annotations

EnsemblPlants:Bra023245.1	EnsemblPlants:Bra023245.1-P	EnsemblPlantsGene:Bra023245	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF00646	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00025422EB	UniProt:M4E394	MapMan:35.1

Description

AT1G46984 (E=4e-048) | F-box protein-related

Coordinates

chrA09:+:20284493..20287457

Molecular Weight (calculated)

55015.7 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.206

Length

483 amino acids

Sequence
(BLAST)

001: MENWTRLIQL AIGQVGHDAS NSPNVELDWM WASWVSPTPC IVVSGTLNGD LDLANPICPM AGRTMLTIAK IVMSLEKYNN PVKHLKIIKG HTQSSKNSST
101: YVGVNSETLP IDLIIEILKR LPAKAIALCR CVSKEWDSIL SSPHFAKSFL TSSSTRPQLL FTFEFKGKWH FFSSPQLHFN ENISVVAPDY HMGVSGDWYK
201: EVCLSANGFV YLYEKQMLKG KMERVPVLCN PSTGQKIPLP KVRAKNNELR SFLGYDPIEK QFKWRWKKPF YVYYYNVERK SVRRVEIQGI EEKVFMDPAA
301: HHGEVFTFPN HVENLIYLHS QTIAKIVMSL EKYNNPVKHL KIIKGHTRSS KNSSTYVGGN SETLPIDLII EILKRLPAKT IALCRCVSKE WDSLLSSPHF
401: AKSFLTSSST RPQLLFTFEF KGKHFVSSPQ LNFNENISVV APDYHMGVSG DWYNEVCLSA NGFVYIYEKQ MLKGKMERVP VAM

Best Arabidopsis Sequence Match ( AT1G46912.2 )
(BLAST)

001: MPSKEDAMNN QKNDSMDRRK LVRRNSQSSV STYVRETLHI DLIIEIVSRL PLDSIAICRC VSKQWASILQ RPDFAESFLT KSLSRPRLLF TFRSGSKWYY
101: FSSPQPQTFG KNLSVVAKDY SAELWVLDDT KNVKWSKYKF VLPYTASEEV KKSIWATDSG ELVWTLSSPL SHPLYVYYYN LESQSVREVE IKGMKDKVSR
201: DIGNSLVTFT NYVENLMFLQ

Arabidopsis Description

F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:Q9C628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.