Factsheet for Bra021767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60961	Canola	cytosol	100.0	100.0
Bra021785.1-P	Field mustard	mitochondrion	64.48	67.02
Bra021782.1-P	Field mustard	plastid	64.74	66.58
Bra021784.1-P	Field mustard	plastid	64.99	66.32
Bra021783.1-P	Field mustard	mitochondrion	64.74	65.73
Bra021769.1-P	Field mustard	cytosol	64.48	63.21
Bra021772.1-P	Field mustard	plastid	59.95	61.03
Bra023809.1-P	Field mustard	mitochondrion	49.62	60.06
Bra027364.1-P	Field mustard	mitochondrion	58.69	59.44
Bra039989.1-P	Field mustard	cytosol	56.68	55.83
Bra021786.1-P	Field mustard	mitochondrion	49.37	53.12
Bra021789.1-P	Field mustard	cytosol	61.96	48.24
AT3G23960.1	Thale cress	cytosol	46.35	45.77
Bra005628.1-P	Field mustard	cytosol	46.35	45.1
Bra021780.1-P	Field mustard	mitochondrion	64.48	43.03
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	42.57	42.36
Bra034016.1-P	Field mustard	cytosol	42.32	41.79
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	41.56	41.46
Bra022877.1-P	Field mustard	cytosol	40.81	41.33
Bra005629.1-P	Field mustard	cytosol	39.29	40.94
Bra021730.1-P	Field mustard	cytosol	40.55	39.75
Bra009129.1-P	Field mustard	cytosol	39.55	39.55
Bra005631.1-P	Field mustard	cytosol	13.85	38.46
Bra022876.1-P	Field mustard	cytosol	14.86	38.06
Bra036902.1-P	Field mustard	cytosol	38.79	37.65
Bra017982.1-P	Field mustard	cytosol	38.54	37.5
Bra036901.1-P	Field mustard	cytosol	39.55	37.38
Bra033850.1-P	Field mustard	cytosol	25.69	36.43
Bra017983.1-P	Field mustard	cytosol	36.78	36.05
Bra033908.1-P	Field mustard	cytosol	32.24	33.16
Bra019597.1-P	Field mustard	nucleus	15.11	33.15
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	35.77	24.57
Bra023245.1-P	Field mustard	cytosol	25.44	20.91
Bra021777.1-P	Field mustard	cytosol	43.32	18.8

Protein Annotations

EnsemblPlants:Bra021767.1	EnsemblPlants:Bra021767.1-P	EnsemblPlantsGene:Bra021767	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F0C	UniProt:M4DZ20	MapMan:35.1	:

Description

AT5G65850 (E=6e-095) | F-box family protein

Coordinates

chrA04:+:14357763..14358956

Molecular Weight (calculated)

45293.9 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.073

Length

397 amino acids

Sequence
(BLAST)

001: MKERKQNDSE NGVKITRRIT RSMATHHRNS LTLPVEVVTE IFSRLPSKSI ARCRCVCKLW SSMLRRQDFT ELFLTKSCAH PRLLFACEDD NEQFLFFSSP
101: QPHNPEENSH VVAVNNLACF PSSYQLFGCT SGFLCYGANL ILKARKKRAY VTVICNPSTG QSLILPTLKS SKTSGIESYL GYDPVSKEFK VLSVRYDGWI
201: SKELHVLTLG TKKLSWRLVE CCVPHSTSRK WICISGVLYY IARTSEAYYM VVCFDLRTEK FSFVKFSRAL PGSATLINYN GRLGLLRSLE DFGNISRASK
301: SIELWVLGDA AKNEWSEHVY MLPDFWKDVV AESMCIAGMV GTHEIVLSPC YQYVPSYVIY FNVERKTIRI VGIQGMEAFQ GNICYTYLNY VENVKLL

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.