Factsheet for Bra021777.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.03	60.52
Bra036901.1-P	Field mustard	cytosol	21.75	47.38
Bra036902.1-P	Field mustard	cytosol	20.11	44.99
AT2G19630.1	Thale cress	cytosol, nucleus, plasma membrane	14.43	44.44
Bra021784.1-P	Field mustard	plastid	18.69	43.96
Bra021772.1-P	Field mustard	plastid	18.69	43.85
Bra021782.1-P	Field mustard	plastid	18.47	43.78
Bra021769.1-P	Field mustard	cytosol	19.34	43.7
Bra021785.1-P	Field mustard	mitochondrion	18.14	43.46
Bra021767.1-P	Field mustard	cytosol	18.8	43.32
Bra021783.1-P	Field mustard	mitochondrion	18.47	43.22
Bra021730.1-P	Field mustard	cytosol	19.02	42.96
Bra039989.1-P	Field mustard	cytosol	18.47	41.94
Bra023809.1-P	Field mustard	mitochondrion	14.97	41.77
Bra027364.1-P	Field mustard	mitochondrion	17.49	40.82
Bra034016.1-P	Field mustard	cytosol	17.92	40.8
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	17.49	40.2
Bra005628.1-P	Field mustard	cytosol	17.92	40.2
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	17.27	39.6
Bra005629.1-P	Field mustard	cytosol	16.39	39.37
Bra022877.1-P	Field mustard	cytosol	16.72	39.03
Bra021786.1-P	Field mustard	mitochondrion	15.74	39.02
Bra009129.1-P	Field mustard	cytosol	16.83	38.79
Bra022876.1-P	Field mustard	cytosol	6.45	38.06
Bra005631.1-P	Field mustard	cytosol	5.9	37.76
Bra019597.1-P	Field mustard	nucleus	7.43	37.57
Bra033850.1-P	Field mustard	cytosol	11.37	37.14
Bra033908.1-P	Field mustard	cytosol	14.97	35.49
Bra021789.1-P	Field mustard	cytosol	19.13	34.31
Bra017982.1-P	Field mustard	cytosol	14.64	32.84
Bra017983.1-P	Field mustard	cytosol	14.21	32.1
Bra021780.1-P	Field mustard	mitochondrion	18.69	28.74
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	15.96	25.26
Bra023245.1-P	Field mustard	cytosol	10.71	20.29

Protein Annotations

EnsemblPlants:Bra021777.1	EnsemblPlants:Bra021777.1-P	EnsemblPlantsGene:Bra021777	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F16	UniProt:M4DZ30	MapMan:35.1	:

Description

AT5G65850 (E=6e-087) | F-box family protein

Coordinates

chrA04:-:14395400..14400228

Molecular Weight (calculated)

103896.0 Da

IEP (calculated)

8.927

GRAVY (calculated)

-0.100

Length

915 amino acids

Sequence
(BLAST)

001: MKTRRRNLSG DLSSTTGSNK RSMTSENGRD NSLPFPIDLV FEIFWKLPLK SIAICRCVSK TWSSVLSRQD FTELFLSRSR TLPKLFLAYQ KGGEFFFFSA
101: PQPQSPDENS SSVVATYHMK FSFHAYLPGL FELSGLDQGL VGLTSRWIGK GRVPSVHVPV ICNPSTGQSL PLPRVKTKRV KSRSLFGYDP IDKHVKVLSM
201: SVSQGSVLPV AEEYQVVTLG TGKLSQRMIN CGRELRYWPH IRGRCINDLK KVDMFFTEGT MINYNGKLGL LWSEGWLSRS STSVNLCVLE DIGKQEWSEH
301: VYVLPALWED IVGSASLSFV GMTQTNEIGM RSLAYPPSPL YLFYFNTERN TVVRVAIQGM DVSEYDRVHI FLDHLENVKL IACAMKTRRR NLSGNDLTTT
401: RRNTRSKTLE NGRDNSLPFP VDLIMEIFSR LPVKSIATCR CVSKTWSSVL RRQDFTELFL SRSRTLPKLL LAYQKDGDLF FFSAPQPQNP DENSSPVVAT
501: YRMKLSFDAY FRNGAFGING LDHGLVGLSG RTHSVICNPS TGQSLPFTRA KTRSMSLFGY DPIDKQVKVL SMWGAKFSGL LNVVAEEYQV LTLGTENPSW
601: RTIDCGCILS YYSQHVRQKC INGVLYYLST DMSTETTVLV CFDVRSEKFS FVKVKTFVTE GTMINYDGKL GFLRAGKSVC AYRESRIVNL WVLEDIEKQE
701: WSERTFVLPA LWEDVVVSAI LGFVGMTRTN EIVMRPLSIL PIPLYLFFFN TKRNTVVRIA IQGMDVSEYD KVHIFLDHVD NVELIVNSVI LTMVNYNGKL
801: GFLLSGESGY VYERSTSVNL WVLEDTDKQE WSERTFVLPA LWEDIVGSVR LGFVGMTRTN EIVMRPLGLP GRPFHLIYFN IERNTVVRVS IQGMDVSEYD
901: HVHIFLDHVE NVKLL

Best Arabidopsis Sequence Match ( AT1G30925.1 )
(BLAST)

001: MNSFPNDDLV YEILLRLPAK SVARCSCVSK LRRSILSRQD FTELFLTKSS ARPRLLFGVK RANGEGLFFS STQPRNSYEK SSLVVAADFH TKFSEVISRE
101: ICSYASGLIY LSDMRISVND EDVVRAICNP ITGNYLGFDP IDKQFKVLFM AYPSGPDDHK ILTLGTRRMR WRKIHCPLTH DPFCEGICIN GVLYYLAIQI
201: DEPLVNQRSF VIVCFDVRFE KFTFIDVDCF YHLINYKGKL GGIDWKHGNA NGSRTFELSM WVLEDVEKHE WSKYDCTFLE YEVMFYNISL AVGMTATCEI
301: VLSEKFASKS FYVFYFNPER ETLQRVEIQG LENHCRVYTI TDHVEDLNVN YKRKHKMALV RRFLAAKKII GGSVAKLRKE TSAILYLNRY WSYPASTTLI
401: NYKGKVGVIN LTHAYERVFP LQLRMTVLED FEKQEWSTYV YTLMAENIVV KYVSVVGMTA TGDIVLVKTN ACKPFYVFYF NPGRNTLLSV EIQGVGEDHK
501: CLNFHTVCAF VDHVEDLQFS FKN

Arabidopsis Description

Putative F-box protein At1g30925 [Source:UniProtKB/Swiss-Prot;Acc:P0C2G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.