Factsheet for Bra021783.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19134	Canola	mitochondrion	94.37	96.6
Bra021785.1-P	Field mustard	mitochondrion	94.37	96.6
Bra021782.1-P	Field mustard	plastid	76.21	77.2
Bra021784.1-P	Field mustard	plastid	74.68	75.06
Bra021767.1-P	Field mustard	cytosol	65.73	64.74
Bra027364.1-P	Field mustard	mitochondrion	59.59	59.44
Bra021769.1-P	Field mustard	cytosol	60.87	58.77
Bra021772.1-P	Field mustard	plastid	58.06	58.21
Bra023809.1-P	Field mustard	mitochondrion	47.83	57.01
Bra039989.1-P	Field mustard	cytosol	58.57	56.82
Bra021786.1-P	Field mustard	mitochondrion	50.13	53.12
Bra021789.1-P	Field mustard	cytosol	59.85	45.88
AT3G23960.1	Thale cress	cytosol	45.27	44.03
Bra034016.1-P	Field mustard	cytosol	42.46	41.29
Bra022876.1-P	Field mustard	cytosol	16.37	41.29
Bra005628.1-P	Field mustard	cytosol	42.46	40.69
Bra021730.1-P	Field mustard	cytosol	41.94	40.49
Bra021780.1-P	Field mustard	mitochondrion	60.61	39.83
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	39.9	39.2
Bra005629.1-P	Field mustard	cytosol	38.11	39.11
Bra022877.1-P	Field mustard	cytosol	38.62	38.52
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	39.13	38.35
Bra009129.1-P	Field mustard	cytosol	38.36	37.78
Bra036902.1-P	Field mustard	cytosol	38.87	37.16
Bra036901.1-P	Field mustard	cytosol	39.39	36.67
Bra005631.1-P	Field mustard	cytosol	13.3	36.36
Bra033850.1-P	Field mustard	cytosol	25.06	35.0
Bra017982.1-P	Field mustard	cytosol	35.81	34.31
Bra019597.1-P	Field mustard	nucleus	15.6	33.7
Bra033908.1-P	Field mustard	cytosol	33.25	33.68
Bra017983.1-P	Field mustard	cytosol	34.02	32.84
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.5	22.66
Bra023245.1-P	Field mustard	cytosol	23.53	19.05
Bra021777.1-P	Field mustard	cytosol	43.22	18.47

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra021783	EnsemblPlants:Bra021783.1	EnsemblPlants:Bra021783.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4DZ36	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544F1C	:

Description

AT2G31470 (E=2e-086) | F-box family protein

Coordinates

chrA04:-:14442837..14444012

Molecular Weight (calculated)

44493.9 Da

IEP (calculated)

9.475

GRAVY (calculated)

-0.105

Length

391 amino acids

Sequence
(BLAST)

001: MKRQKGGLSI SQRVTRSTTR LDRNSLTLPV EVVTEIFLRL PLKSIATCRC VCKLWSSVLR SQDFTDSFLT QSCAHPQLLF ACSDYRHEIH FLSSSQPENP
101: EDNSHVVAAN HLARFPTSYG LFGCTNGFFC YGANQGKNKA VIVTVVCNPS TGQSLTLPRL NSKERYRVEN YLGYDPVAKV FKVLSVFDGT EHHVLTLGTK
201: KLSWRVVECS IPHYSSRKGI CISGVLYYIA AEPRSSSRES MVVCFDLGTE KFSFVNLSRL KRALPQSTTL VNYNDRLGLL MSSEDTCYVF RTCKRFKLWV
301: LRDAAKHEWS KHVYVLPPLW KDVIVDRMCI AGMVGVNEIV LAPWFQYVPS YVIYYNVESK TIRKVGIQGM EALQGRRLNT YLNYVENVKL L

Best Arabidopsis Sequence Match ( AT3G23960.1 )
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Arabidopsis Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.