Factsheet for Bra023809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	30.49	79.37
Bra027364.1-P	Field mustard	mitochondrion	75.61	63.27
Bra021769.1-P	Field mustard	cytosol	61.59	49.88
Bra021767.1-P	Field mustard	cytosol	60.06	49.62
Bra021785.1-P	Field mustard	mitochondrion	57.01	48.95
Bra021772.1-P	Field mustard	plastid	57.62	48.46
Bra021783.1-P	Field mustard	mitochondrion	57.01	47.83
Bra021782.1-P	Field mustard	plastid	55.79	47.41
Bra021784.1-P	Field mustard	plastid	56.1	47.3
Bra039989.1-P	Field mustard	cytosol	55.18	44.91
Bra021786.1-P	Field mustard	mitochondrion	47.56	42.28
Bra021789.1-P	Field mustard	cytosol	60.37	38.82
Bra005631.1-P	Field mustard	cytosol	15.85	36.36
AT3G23960.1	Thale cress	cytosol	43.29	35.32
Bra021730.1-P	Field mustard	cytosol	41.46	33.58
Bra021780.1-P	Field mustard	mitochondrion	59.76	32.94
Bra005628.1-P	Field mustard	cytosol	40.55	32.6
Bra022877.1-P	Field mustard	cytosol	37.5	31.38
Bra005629.1-P	Field mustard	cytosol	35.98	30.97
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	37.2	30.65
Bra034016.1-P	Field mustard	cytosol	37.2	30.35
Bra019597.1-P	Field mustard	nucleus	16.46	29.83
Bra036901.1-P	Field mustard	cytosol	38.11	29.76
Bra036902.1-P	Field mustard	cytosol	35.98	28.85
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	35.06	28.82
Bra009129.1-P	Field mustard	cytosol	33.84	27.96
Bra022876.1-P	Field mustard	cytosol	12.5	26.45
Bra033850.1-P	Field mustard	cytosol	21.65	25.36
Bra017982.1-P	Field mustard	cytosol	31.4	25.25
Bra033908.1-P	Field mustard	cytosol	28.66	24.35
Bra017983.1-P	Field mustard	cytosol	29.88	24.2
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.49	17.3
Bra023245.1-P	Field mustard	cytosol	23.78	16.15
Bra021777.1-P	Field mustard	cytosol	41.77	14.97

Protein Annotations

EnsemblPlants:Bra023809.1	EnsemblPlants:Bra023809.1-P	EnsemblPlantsGene:Bra023809	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0002544172	UniProt:M4E4V5	MapMan:35.1	:	:

Description

AT5G65850 (E=6e-032) | F-box family protein

Coordinates

chrA01:+:20126098..20127235

Molecular Weight (calculated)

37436.1 Da

IEP (calculated)

9.184

GRAVY (calculated)

-0.104

Length

328 amino acids

Sequence
(BLAST)

001: MTSRRTASRL MTSIHRNSLP IPDDLAVEIF SRLPSKAIGR CRCTCKLLSS MLRRQDFIDL FLTKSFARPQ LLFACQDYYS NYIFFSSSPH PEEENSSYVV
101: AANHLASFHS SYKLFGCTND FLYYGAKPVW KGSINPLIYN PLTGQSLTFP RLKLSKRFAV VESYLGYDPL SKEFKLQYAD SMVACFDLRD EKFSFVNFSR
201: AMHGSTVLVN YNGKLGLLMS GDPPGVNISR ASESFELWVL QDAEWSKHVY VLPPSWKDVV TETMRIAGII VGTNEIVLVP GLQNVPSYVL YFNVERNTIT
301: KVRIQGMETF QGKRFNTYLN YVENVKLL

Best Arabidopsis Sequence Match ( AT2G19630.1 )
(BLAST)

001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF

Arabidopsis Description

Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.