Factsheet for Bra033908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10678	Canola	cytosol	98.96	98.96
Bra033850.1-P	Field mustard	cytosol	39.12	53.93
Bra019597.1-P	Field mustard	nucleus	17.36	37.02
Bra034016.1-P	Field mustard	cytosol	38.08	36.57
Bra021730.1-P	Field mustard	cytosol	38.08	36.3
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	36.53	35.34
Bra009129.1-P	Field mustard	cytosol	36.27	35.26
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	36.27	35.18
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.59	35.12
Bra036901.1-P	Field mustard	cytosol	38.08	35.0
Bra005628.1-P	Field mustard	cytosol	36.53	34.56
Bra021772.1-P	Field mustard	plastid	34.46	34.1
Bra017982.1-P	Field mustard	cytosol	35.49	33.58
Bra021782.1-P	Field mustard	plastid	33.42	33.42
Bra017983.1-P	Field mustard	cytosol	34.97	33.33
Bra021783.1-P	Field mustard	mitochondrion	33.68	33.25
Bra021785.1-P	Field mustard	mitochondrion	32.9	33.25
Bra021784.1-P	Field mustard	plastid	33.42	33.16
Bra036902.1-P	Field mustard	cytosol	34.97	33.01
Bra027364.1-P	Field mustard	mitochondrion	32.9	32.4
Bra021767.1-P	Field mustard	cytosol	33.16	32.24
Bra022877.1-P	Field mustard	cytosol	32.64	32.14
Bra039989.1-P	Field mustard	cytosol	33.42	32.01
Bra021769.1-P	Field mustard	cytosol	32.12	30.62
Bra005629.1-P	Field mustard	cytosol	29.53	29.92
Bra022876.1-P	Field mustard	cytosol	11.92	29.68
Bra021786.1-P	Field mustard	mitochondrion	27.72	29.0
Bra023809.1-P	Field mustard	mitochondrion	24.35	28.66
Bra021789.1-P	Field mustard	cytosol	31.61	23.92
Bra023245.1-P	Field mustard	cytosol	27.46	21.95
Bra021780.1-P	Field mustard	mitochondrion	32.9	21.34
Bra005631.1-P	Field mustard	cytosol	7.51	20.28
Bra021777.1-P	Field mustard	cytosol	35.49	14.97

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra033908	EnsemblPlants:Bra033908.1	EnsemblPlants:Bra033908.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4EYL6	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002547353	:	:

Description

AT1G46984 (E=1e-089) | F-box protein-related

Coordinates

chrA05:+:15103855..15105015

Molecular Weight (calculated)

43921.2 Da

IEP (calculated)

8.641

GRAVY (calculated)

-0.213

Length

386 amino acids

Sequence
(BLAST)

001: MDGPGNSRLK IVSLDTELSI ETIPNELIIE ILSRVPAKSI ATCRRVLKEW KSLLLTPAFT DSFLTISSAQ PRILLTFKCS GKWHFCTAPQ PQHLDEELSV
101: VEADYHMRLN GGSGPESCLS VQGFTCLIDR PKIMGKYERV PVICNPSTGQ HLTLPKVKAK NSDLRTFFGY DPIKKQFKVL CMTVTNYRKQ VNSKEHQVLT
201: KGKGRLSWRK IICLFPHYPE RERDGICING ILYYIARSDK TCLIASFDVG SEEFRLINMP EGSNLTYISA LVNFKGKLCA VVVYSGSHGE LWVLDDTQKE
301: KWSKHSFDSP NTDFEEVKST WATDTGEIAW VLSRWKNPFH VFFYNLDSKC VRRVEIKGID DKVLLGKDRV IQHLSVTSYV ENVMIL

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.