Factsheet for Bra019597.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00206	Canola	nucleus	100.0	100.0
Bra021772.1-P	Field mustard	plastid	39.78	18.46
Bra009129.1-P	Field mustard	cytosol	40.33	18.39
Bra017983.1-P	Field mustard	cytosol	40.88	18.27
Bra017982.1-P	Field mustard	cytosol	40.88	18.14
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	39.23	17.79
Bra033908.1-P	Field mustard	cytosol	37.02	17.36
Bra034016.1-P	Field mustard	cytosol	37.57	16.92
Bra021786.1-P	Field mustard	mitochondrion	33.7	16.53
Bra023809.1-P	Field mustard	mitochondrion	29.83	16.46
Bra021730.1-P	Field mustard	cytosol	36.46	16.3
Bra005629.1-P	Field mustard	cytosol	34.25	16.27
Bra022877.1-P	Field mustard	cytosol	34.81	16.07
Bra021782.1-P	Field mustard	plastid	34.25	16.06
Bra021785.1-P	Field mustard	mitochondrion	33.7	15.97
Bra021784.1-P	Field mustard	plastid	34.25	15.94
Bra005628.1-P	Field mustard	cytosol	35.36	15.69
Bra036902.1-P	Field mustard	cytosol	35.36	15.65
Bra021783.1-P	Field mustard	mitochondrion	33.7	15.6
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	34.25	15.58
Bra027364.1-P	Field mustard	mitochondrion	33.7	15.56
Bra039989.1-P	Field mustard	cytosol	34.25	15.38
Bra021767.1-P	Field mustard	cytosol	33.15	15.11
Bra021769.1-P	Field mustard	cytosol	33.15	14.81
Bra036901.1-P	Field mustard	cytosol	34.25	14.76
Bra021789.1-P	Field mustard	cytosol	37.57	13.33
Bra023245.1-P	Field mustard	cytosol	33.7	12.63
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.81	10.9
Bra021780.1-P	Field mustard	mitochondrion	34.25	10.42
Bra033850.1-P	Field mustard	cytosol	14.92	9.64
Bra021777.1-P	Field mustard	cytosol	37.57	7.43
Bra022876.1-P	Field mustard	cytosol	0.0	0.0
Bra005631.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra019597	EnsemblPlants:Bra019597.1	EnsemblPlants:Bra019597.1-P	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
UniProt:M4DSV4	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253EF75	:	:	:

Description

AT3G49450 (E=2e-036) | F-box family protein

Coordinates

chrA06:+:11861635..11862180

Molecular Weight (calculated)

20821.3 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.525

Length

181 amino acids

Sequence
(BLAST)

001: MRKQQKHVSK TANPKTRSVE NSESIPADLI FEIFSRLTAK SLSRFRCVSK EWASIFCSRN FSHSFLTRSS ARPRLLFTFH VDGKLFSYSA PQPRNPDQNH
101: MPIPTRMGSF LIHRPDSGLI CPSDMWSKRG CNDSKMIMIC NPSTGQFKKL PAARTRRVHV RTYLGHDPIK KEYKLLCMSL S

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.