Factsheet for Bra000514.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83262	Canola	cytosol, mitochondrion	63.32	91.96
CDY31173	Canola	cytosol, mitochondrion	59.0	85.68
Bra033850.1-P	Field mustard	cytosol	33.91	70.0
Bra033908.1-P	Field mustard	cytosol	35.12	52.59
AT1G46984.1	Thale cress	mitochondrion	30.45	47.57
AT1G46840.1	Thale cress	cytosol	31.66	38.53
Bra017982.1-P	Field mustard	cytosol	26.99	38.24
AT1G46912.1	Thale cress	plasma membrane	20.42	37.82
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	25.95	37.59
Bra034016.1-P	Field mustard	cytosol	26.12	37.56
Bra017983.1-P	Field mustard	cytosol	25.95	37.04
Bra009129.1-P	Field mustard	cytosol	25.43	37.03
Bra021730.1-P	Field mustard	cytosol	25.61	36.54
Bra005628.1-P	Field mustard	cytosol	25.43	36.03
Bra021767.1-P	Field mustard	cytosol	24.57	35.77
Bra034015.1-P	Field mustard	cytosol, nucleus, peroxisome	24.22	35.18
Bra021772.1-P	Field mustard	plastid	23.7	35.13
Bra019597.1-P	Field mustard	nucleus	10.9	34.81
Bra021784.1-P	Field mustard	plastid	23.36	34.7
Bra021782.1-P	Field mustard	plastid	23.01	34.46
Bra039989.1-P	Field mustard	cytosol	23.88	34.24
Bra036901.1-P	Field mustard	cytosol	24.74	34.05
Bra021785.1-P	Field mustard	mitochondrion	22.49	34.03
Bra027364.1-P	Field mustard	mitochondrion	23.01	33.93
Bra005629.1-P	Field mustard	cytosol	22.32	33.86
Bra021783.1-P	Field mustard	mitochondrion	22.66	33.5
Bra036902.1-P	Field mustard	cytosol	23.7	33.5
Bra022877.1-P	Field mustard	cytosol	22.49	33.16
Bra022876.1-P	Field mustard	cytosol	8.82	32.9
Bra021769.1-P	Field mustard	cytosol	22.84	32.59
Bra021786.1-P	Field mustard	mitochondrion	20.24	31.71
Bra023809.1-P	Field mustard	mitochondrion	17.3	30.49
Bra023245.1-P	Field mustard	cytosol	25.43	30.43
Bra005631.1-P	Field mustard	cytosol	6.92	27.97
Bra021789.1-P	Field mustard	cytosol	23.7	26.86
Bra021780.1-P	Field mustard	mitochondrion	25.95	25.21
Bra021777.1-P	Field mustard	cytosol	25.26	15.96

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra000514	EnsemblPlants:Bra000514.1	EnsemblPlants:Bra000514.1-P	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	UniProt:M4C8I6	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000254002D	SEG:seg

Description

AT1G46984 (E=2e-094) | F-box protein-related

Coordinates

chrA03:-:11520590..11523206

Molecular Weight (calculated)

65862.6 Da

IEP (calculated)

8.999

GRAVY (calculated)

-0.108

Length

578 amino acids

Sequence
(BLAST)

001: MNHCKIIRRR TQSSTTSSTY VGGNLETLPI DLIVEILKRL PTKTIAKCRC VSKQWGSLLC DPYFTKSFLT CSSTRPRLLF TFEFGGKWHF FSSPQPQNGD
101: EQVVIADYHM GFSGDWYKET CILANGFIYL NDRKMLKEKM ERVPVICNPS TGQQVHLPKV LAKNKDLRSF LGYDPIENQL KVLCMTVARY REQTNSREHQ
201: VLTLGKGKPS WRKIACLFPH FPENFGTGIC INGILYYIAR SNLNTVIACF DVKYEKFRFI QIDDENSKLY WFLTLINYKG KLGAIVYDRS ANGQLWVLDD
301: PEKEKWSKHI FHLPDAAFWI VRSIWATDTG EIVWTRSRWT HPFYVFYYNL ERQSVRRVEI KGIEGKPPPP GPVTTGRETS SPLRSRASPM QSPQEALSSE
401: NPDSSSFIQS LFESDDWQFG ICSAKPSWFL HGNAGTRSSC LNSLLIVALE LLVKPQYIFN VVDIVIYSLL DSHSPSILVN AKSSQLGLCF LYGHGAFHQK
501: LLSVIIPTVA YRCINVVFDY QFALGKKMKF LHETLYTAEL DSPLKSSIFQ CFVMLFSIIP SSSMAPGSSS LIVNFVAL

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.