Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70684 | Canola | cytosol | 32.05 | 48.78 |
| Bra033850.1-P | Field mustard | cytosol | 38.46 | 42.86 |
| CDY29942 | Canola | cytosol | 40.38 | 42.42 |
| CDX83262 | Canola | cytosol, mitochondrion | 40.38 | 31.66 |
| AT1G46984.1 | Thale cress | mitochondrion | 37.18 | 31.35 |
| CDY31173 | Canola | cytosol, mitochondrion | 39.42 | 30.9 |
| AT1G46840.1 | Thale cress | cytosol | 42.31 | 27.79 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 33.65 | 26.79 |
| AT2G31470.1 | Thale cress | cytosol | 31.73 | 25.58 |
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 23.4 | 24.58 |
| AT3G23960.1 | Thale cress | cytosol | 31.41 | 24.38 |
| AT3G49450.1 | Thale cress | cytosol | 28.85 | 22.5 |
| AT1G53790.2 | Thale cress | cytosol | 30.77 | 20.82 |
| Bra000514.1-P | Field mustard | cytosol, nucleus, plasma membrane | 37.82 | 20.42 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 26.6 | 20.05 |
| AT3G47020.1 | Thale cress | cytosol | 19.87 | 19.81 |
| AT3G61340.2 | Thale cress | cytosol | 27.24 | 19.54 |
| CDY12259 | Canola | cytosol | 15.71 | 15.12 |
| CDY12260 | Canola | cytosol | 14.42 | 14.11 |
| Bra023245.1-P | Field mustard | cytosol | 16.03 | 10.35 |
Protein Annotations
| ArrayExpress:AT1G46912 | EnsemblPlants:AT1G46912.1 | EnsemblPlantsGene:AT1G46912 | EntrezGene:841119 | GO:GO:0008150 | InterPro:F-box-assoc_dom_typ3 |
| InterPro:F-box-assoc_interact_dom | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | PFAM:PF08268 | ProteinID:AAG50622.1 | ProteinID:AEE32131.1 |
| RefSeq:AT1G46912 | RefSeq:AT1G46912-TAIR-G | RefSeq:NP_175149.1 | SEG:seg | TAIR:AT1G46912 | TAIR:AT1G46912.1 |
| TIGRFAMs:TIGR01640 | Unigene:At.52045 | UniParc:UPI00000AA5B3 | UniProt:Q9C628 | MapMan:35.1 | : |
Description
F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:Q9C628]
Coordinates
chr1:+:17272691..17273629
Molecular Weight (calculated)
36258.0 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.066
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLCVETMGF HTSTSRFCGI VPHKVIVTAA SFVHLQKWQQ VVLLLIPSTS NFWKELKCCS KRVSYGLFWK LDITSPKVGT GNVILKCFFG YDPIRKQFKV
101: LCWTNFYRQG RTSNEQYQVL TLGTGELLWR KIECLFPHEP HKDKNGICIN GVLYYIAWLK NRCYDGTEII VCFDVRSEKF SFIEIEIKEV KGSILLEYKG
201: KLGVLMWSVY SYSAELWVLD DTKNVKWSKY KFVLPYTASE EVKKSIWATD SGELVWTLSS PLSHPLYVYY YNLESQSVRE VEIKGMKDKV SRDIGNSLVT
301: FTNYVENLMF LQ
101: LCWTNFYRQG RTSNEQYQVL TLGTGELLWR KIECLFPHEP HKDKNGICIN GVLYYIAWLK NRCYDGTEII VCFDVRSEKF SFIEIEIKEV KGSILLEYKG
201: KLGVLMWSVY SYSAELWVLD DTKNVKWSKY KFVLPYTASE EVKKSIWATD SGELVWTLSS PLSHPLYVYY YNLESQSVRE VEIKGMKDKV SRDIGNSLVT
301: FTNYVENLMF LQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.