CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31173	Canola	cytosol, mitochondrion	93.72	93.72
CDY70684	Canola	cytosol	42.46	82.44
CDY29942	Canola	cytosol	51.26	68.69
Bra000514.1-P	Field mustard	cytosol, nucleus, plasma membrane	91.96	63.32
CDY10678	Canola	cytosol	53.27	54.92
CDY12260	Canola	cytosol	40.45	50.47
CDY12259	Canola	cytosol	40.95	50.31
AT1G46984.1	Thale cress	mitochondrion	46.23	49.73
CDY66546	Canola	cytosol	26.88	42.8
CDY67625	Canola	mitochondrion	26.63	41.25
CDY05937	Canola	cytosol	34.42	40.53
AT1G46912.1	Thale cress	plasma membrane	31.66	40.38
CDY65288	Canola	mitochondrion	27.89	40.22
CDY65287	Canola	cytosol	9.8	40.21
CDY08137	Canola	cytosol	40.95	39.95
AT1G46840.1	Thale cress	cytosol	47.49	39.79
CDX70134	Canola	cytosol	38.44	38.83
CDY19088	Canola	cytosol	39.45	38.77
CDY15344	Canola	mitochondrion	33.67	38.73
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.2	38.52
CDY12626	Canola	cytosol	36.18	38.5
CDY08136	Canola	cytosol	38.94	38.27
CDY66545	Canola	cytosol, peroxisome, plastid	35.18	38.15
CDX98860	Canola	cytosol	38.69	38.12
CDY12239	Canola	mitochondrion	26.63	37.99
CDY30661	Canola	cytosol	22.11	37.93
CDY42088	Canola	cytosol	38.69	37.65
CDY67859	Canola	cytosol, mitochondrion	35.68	37.57
CDY60961	Canola	cytosol	37.44	37.53
CDY15358	Canola	cytosol, extracellular, plastid	13.07	37.14
CDY42089	Canola	cytosol	37.94	37.01
CDY72410	Canola	cytosol	34.42	36.93
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	28.39	36.81
CDY46037	Canola	extracellular	12.56	36.76
CDY70182	Canola	extracellular	12.56	36.76
CDY15336	Canola	plastid	36.18	36.73
CDY15359	Canola	cytosol, plastid	36.68	36.68
CDY15332	Canola	cytosol	35.93	36.67
CDY12627	Canola	cytosol	36.43	36.43
CDY19134	Canola	mitochondrion	34.92	36.39
CDY15357	Canola	cytosol, nucleus, plastid	5.03	36.36
CDY42091	Canola	mitochondrion	27.89	35.92
CDX79454	Canola	cytosol	27.14	35.88
CDY15324	Canola	cytosol	34.42	35.77
CDY15327	Canola	cytosol	34.42	35.58
CDY51358	Canola	cytosol	33.67	35.45
CDY19137	Canola	cytosol, mitochondrion, plastid	35.93	35.22
CDX97551	Canola	mitochondrion	34.67	35.2
CDY15352	Canola	mitochondrion	35.68	35.15
CDY29771	Canola	cytosol, plastid	29.4	35.14
CDY00206	Canola	nucleus	15.83	34.81
CDX79453	Canola	plastid	33.17	34.74
CDY15333	Canola	mitochondrion	33.42	34.64
CDY19132	Canola	mitochondrion	34.17	34.61
CDY29772	Canola	cytosol	35.18	34.31
CDY52273	Canola	cytosol, plastid	25.63	34.23
CDY60959	Canola	cytosol, mitochondrion, plastid	23.62	33.94
CDY72470	Canola	golgi, nucleus, plasma membrane	32.91	33.68
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.93	32.35
CDY15326	Canola	cytosol	10.3	32.03
CDY52272	Canola	cytosol	1.76	31.82
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.8	30.95
CDY18160	Canola	cytosol	13.82	30.9
CDY42092	Canola	cytosol	10.8	30.5
CDX97874	Canola	extracellular	20.1	29.85
CDY30662	Canola	extracellular, mitochondrion	10.05	28.99
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	35.18	24.35
CDY19131	Canola	mitochondrion	34.17	22.86
CDY15353	Canola	cytosol	28.39	21.94
CDY26564	Canola	mitochondrion	20.85	18.12
CDY15999	Canola	cytosol, mitochondrion	24.62	15.22
CDY15342	Canola	cytosol	7.04	12.28

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlants:CDX83262	ProteinID:CDX83262	ProteinID:CDX83262.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00138813001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF29D6	SEG:seg

Description

BnaA03g22440D

Coordinates

chrLK031832:+:713981..715177

Molecular Weight (calculated)

46509.3 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.319

Length

398 amino acids

Sequence
(BLAST)

001: MNREKYNPMN HCKIIRRRTQ SSTTSSTYVG GNLETLPIDL IVEILKRLPT KTIAKCRCVS KQWGSLLCDP YFTKSFLTCS STRPRLLFTF EFGGKWHFFS
101: SPQPQNGDEQ VVIADYHMGF SGDWYKETCI LANGFIYLND RKMLKEKMER VPVICNPSTG QQVHLPKVLA KNKDLRSFLG YDPIENQLKV LCMTVARYRE
201: QTNSREHQVL TLGKGKPSWR KIACLFPHFP ENFGTGICIN GILYYIARSN LNTVIACFDV KYEKFRFIQI DDENSKLYWF LTLINYKGKL GAIVYDRSAN
301: GQLWVLDDPE KEKWSKHIFH LPDAAFWIVR SIWATDTGEI VWTRSRWTHP FYVFYYNLER QSVRRVEIKG IEGKVLMGHY RPEAILTFTN HVENVMLL

Best Arabidopsis Sequence Match ( AT1G46984.1 )
(BLAST)

001: MNRRKNDFLV RPKRIRCYTQ LSTLPIDLII EILSRLPMNS IAICRLVSKQ WASILQSSDF TESFLIKSPP RPRLLFTIRY GSKWHLFSAP QPRNFDENFP
101: VVATDYHKGF SGNWCMQSFQ LVNGFIYLNN RLSLKGKIDR VSVIWNPSTG QQIPLPDLGV KNSHSKSFFG YDPIEKQFKV LCITSSKEHQ VLTLGTGRKL
201: SWRKIEYSYP HYPRKKSNGI CINGVLYYRN TNAMIVRFDV RSEEFRFVEI KMYVEILSLI NYKGKLGVLF PNTDLAQLWV LDDTNKVEWS KHNFVFPDTT
301: FEAIRATDTG EMFCASSCWR DSLYVSYYDL EKESVKKVKI KGIEDKLSIG KHHANEFFIF PNHVENVMVL

Arabidopsis Description

Putative F-box protein At1g46984 [Source:UniProtKB/Swiss-Prot;Acc:Q9C627]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.