Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009129.1-P | Field mustard | cytosol | 97.21 | 96.47 |
| CDX98860 | Canola | cytosol | 77.67 | 75.74 |
| CDY66546 | Canola | cytosol | 31.98 | 50.4 |
| CDY65288 | Canola | mitochondrion | 35.03 | 50.0 |
| AT2G31470.1 | Thale cress | cytosol | 48.48 | 49.35 |
| CDY19088 | Canola | cytosol | 48.98 | 47.65 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 48.22 | 46.91 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 42.89 | 46.05 |
| CDY12239 | Canola | mitochondrion | 32.23 | 45.52 |
| CDY65287 | Canola | cytosol | 10.66 | 43.3 |
| CDY42088 | Canola | cytosol | 44.92 | 43.28 |
| CDY12626 | Canola | cytosol | 40.86 | 43.05 |
| CDX79454 | Canola | cytosol | 32.74 | 42.86 |
| CDY42091 | Canola | mitochondrion | 33.5 | 42.72 |
| CDY42092 | Canola | cytosol | 15.23 | 42.55 |
| CDY67859 | Canola | cytosol, mitochondrion | 40.36 | 42.06 |
| CDY15344 | Canola | mitochondrion | 36.8 | 41.91 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 5.84 | 41.82 |
| CDY29771 | Canola | cytosol, plastid | 35.28 | 41.74 |
| CDY12627 | Canola | cytosol | 42.13 | 41.71 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 32.49 | 41.69 |
| CDY42089 | Canola | cytosol | 43.15 | 41.67 |
| CDX79453 | Canola | plastid | 40.1 | 41.58 |
| CDY19134 | Canola | mitochondrion | 40.1 | 41.36 |
| CDY15332 | Canola | cytosol | 40.36 | 40.77 |
| CDY52273 | Canola | cytosol, plastid | 30.71 | 40.6 |
| CDY60961 | Canola | cytosol | 40.86 | 40.55 |
| CDY46037 | Canola | extracellular | 13.96 | 40.44 |
| CDY70182 | Canola | extracellular | 13.96 | 40.44 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 41.37 | 40.15 |
| CDY15333 | Canola | mitochondrion | 39.09 | 40.1 |
| CDY15352 | Canola | mitochondrion | 41.12 | 40.1 |
| CDY67625 | Canola | mitochondrion | 26.14 | 40.08 |
| CDY15336 | Canola | plastid | 39.85 | 40.05 |
| CDY15327 | Canola | cytosol | 39.09 | 40.0 |
| CDY70684 | Canola | cytosol | 20.81 | 40.0 |
| CDY15359 | Canola | cytosol, plastid | 40.36 | 39.95 |
| CDY15324 | Canola | cytosol | 38.83 | 39.95 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 38.58 | 39.07 |
| CDY19132 | Canola | mitochondrion | 38.83 | 38.93 |
| CDY00206 | Canola | nucleus | 17.77 | 38.67 |
| CDX83262 | Canola | cytosol, mitochondrion | 38.83 | 38.44 |
| CDY31173 | Canola | cytosol, mitochondrion | 38.58 | 38.19 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.18 | 38.1 |
| CDX97551 | Canola | mitochondrion | 37.82 | 38.01 |
| CDY29772 | Canola | cytosol | 39.34 | 37.99 |
| CDY10678 | Canola | cytosol | 36.55 | 37.31 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 12.94 | 36.43 |
| CDY72410 | Canola | cytosol | 34.26 | 36.39 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 25.38 | 36.1 |
| CDY51358 | Canola | cytosol | 34.52 | 35.98 |
| CDY18160 | Canola | cytosol | 16.24 | 35.96 |
| CDY15326 | Canola | cytosol | 11.68 | 35.94 |
| CDY08137 | Canola | cytosol | 37.06 | 35.78 |
| CDY05937 | Canola | cytosol | 30.46 | 35.5 |
| CDY08136 | Canola | cytosol | 36.29 | 35.31 |
| CDY30662 | Canola | extracellular, mitochondrion | 12.18 | 34.78 |
| CDY30661 | Canola | cytosol | 20.3 | 34.48 |
| CDY29942 | Canola | cytosol | 25.89 | 34.34 |
| CDX97874 | Canola | extracellular | 23.1 | 33.96 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 36.55 | 32.58 |
| CDY12259 | Canola | cytosol | 24.87 | 30.25 |
| CDY12260 | Canola | cytosol | 23.86 | 29.47 |
| CDY52272 | Canola | cytosol | 1.52 | 27.27 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 39.09 | 26.78 |
| CDY19131 | Canola | mitochondrion | 39.34 | 26.05 |
| CDY15353 | Canola | cytosol | 33.25 | 25.44 |
| CDY26564 | Canola | mitochondrion | 21.83 | 18.78 |
| CDY15999 | Canola | cytosol, mitochondrion | 24.37 | 14.91 |
| CDY15342 | Canola | cytosol | 6.85 | 11.84 |
Protein Annotations
| MapMan:35.1 | EnsemblPlants:CDX70134 | ProteinID:CDX70134 | ProteinID:CDX70134.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00136245001 |
| InterPro:IPR001810 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF47 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0004EE9C5C | : | : | : | : |
Description
BnaA10g24830D
Coordinates
chrLK031790:-:3270958..3272142
Molecular Weight (calculated)
45808.2 Da
IEP (calculated)
9.078
GRAVY (calculated)
-0.242
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRRQKILE DRQAVVERLN AGQNSLQIPV DLIFEILLRL PVKSIARGRC LSKLWASILE RQDFTDHYLT RSSARPQLLF AFQDRCKVFF FSAPQDDNSS
101: LITASYHMSF PVNRVKEIYS PMVCVREGMK TPVTVWVICN PSTGQYFTLP RMKTRNNKCD VRSFFGYDPV EKQFKVLSMT TLAHGKRDLV IYKEHQVLTL
201: QTGKLSWRMI ECNVPHHHGI NCICINGVLY YKAKNGADSS TYGKDIIVTF DVRSEKFGFI EVDKPFIPVH TLINFNAKLA SVESYSFNRR SPIHLWVLDD
301: IEKNEWSKHV YKLPASWEEV VGDADLYCVK VTASNEVVLS GYYQRSPFYV FYYSLEKETV RRVEIQGMEA FKHFQVYTFV DHVEDVKVYF KTGS
101: LITASYHMSF PVNRVKEIYS PMVCVREGMK TPVTVWVICN PSTGQYFTLP RMKTRNNKCD VRSFFGYDPV EKQFKVLSMT TLAHGKRDLV IYKEHQVLTL
201: QTGKLSWRMI ECNVPHHHGI NCICINGVLY YKAKNGADSS TYGKDIIVTF DVRSEKFGFI EVDKPFIPVH TLINFNAKLA SVESYSFNRR SPIHLWVLDD
301: IEKNEWSKHV YKLPASWEEV VGDADLYCVK VTASNEVVLS GYYQRSPFYV FYYSLEKETV RRVEIQGMEA FKHFQVYTFV DHVEDVKVYF KTGS
001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI
Arabidopsis Description
DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.