CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42092	Canola	cytosol	49.46	97.87
CDX79454	Canola	cytosol	54.48	50.5
CDY42091	Canola	mitochondrion	50.9	45.95
CDY46037	Canola	extracellular	19.35	39.71
CDY70182	Canola	extracellular	19.35	39.71
CDY15326	Canola	cytosol	17.56	38.28
CDY18160	Canola	cytosol	24.37	38.2
CDY15357	Canola	cytosol, nucleus, plastid	7.53	38.18
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	41.94	38.11
CDY29771	Canola	cytosol, plastid	44.09	36.94
CDY52272	Canola	cytosol	2.87	36.36
CDY72470	Canola	golgi, nucleus, plasma membrane	49.82	35.73
CDY70684	Canola	cytosol	25.09	34.15
CDY19134	Canola	mitochondrion	45.16	32.98
CDX98860	Canola	cytosol	47.31	32.67
CDX70134	Canola	cytosol	45.52	32.23
CDY30662	Canola	extracellular, mitochondrion	15.77	31.88
CDY15333	Canola	mitochondrion	43.73	31.77
CDY15336	Canola	plastid	44.44	31.63
CDY15324	Canola	cytosol	43.37	31.59
CDY15332	Canola	cytosol	43.01	30.77
CDY67625	Canola	mitochondrion	28.32	30.74
CDY15359	Canola	cytosol, plastid	43.73	30.65
CDY15327	Canola	cytosol	42.29	30.65
CDY60961	Canola	cytosol	43.37	30.48
CDY15352	Canola	mitochondrion	43.73	30.2
CDY42089	Canola	cytosol	43.73	29.9
CDY65287	Canola	cytosol	10.39	29.9
CDY52273	Canola	cytosol, plastid	31.9	29.87
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.65	29.38
CDY65288	Canola	mitochondrion	29.03	29.35
CDY19132	Canola	mitochondrion	41.22	29.26
CDY19088	Canola	cytosol	41.94	28.89
CDX97551	Canola	mitochondrion	40.5	28.83
CDY19137	Canola	cytosol, mitochondrion, plastid	41.94	28.82
CDY12627	Canola	cytosol	40.5	28.39
CDY51358	Canola	cytosol	37.99	28.04
CDY08136	Canola	cytosol	40.14	27.65
CDY15344	Canola	mitochondrion	34.05	27.46
CDY29772	Canola	cytosol	40.14	27.45
CDY08137	Canola	cytosol	39.43	26.96
CDY42088	Canola	cytosol	39.43	26.89
CDY31173	Canola	cytosol, mitochondrion	38.35	26.88
CDX83262	Canola	cytosol, mitochondrion	37.99	26.63
CDY12626	Canola	cytosol	35.48	26.47
CDY67859	Canola	cytosol, mitochondrion	35.84	26.45
CDY66545	Canola	cytosol, peroxisome, plastid	34.77	26.43
CDY15358	Canola	cytosol, extracellular, plastid	13.26	26.43
CDY05937	Canola	cytosol	31.9	26.33
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	11.83	26.19
CDY72410	Canola	cytosol	34.77	26.15
CDX97874	Canola	extracellular	24.73	25.75
CDY29942	Canola	cytosol	27.24	25.59
CDY60959	Canola	cytosol, mitochondrion, plastid	24.73	24.91
CDX79453	Canola	plastid	33.69	24.74
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	38.71	24.43
CDY66546	Canola	cytosol	20.43	22.8
CDY10678	Canola	cytosol	30.11	21.76
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.73	21.22
CDY30661	Canola	cytosol	17.56	21.12
CDY19131	Canola	mitochondrion	41.58	19.5
CDY15353	Canola	cytosol	34.05	18.45
CDY00206	Canola	nucleus	10.39	16.02
CDY12260	Canola	cytosol	17.92	15.67
CDY26564	Canola	mitochondrion	24.01	14.63
CDY12259	Canola	cytosol	16.85	14.51
CDY15342	Canola	cytosol	9.68	11.84
CDY15999	Canola	cytosol, mitochondrion	26.16	11.34

Protein Annotations

EnsemblPlants:CDY12239	EnsemblPlantsGene:GSBRNA2T00061276001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF08268	ProteinID:CDY12239
ProteinID:CDY12239.1	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE5CCA	UniProt:A0A078FGV4	MapMan:35.1

Description

BnaC04g12690DBnaC04g12690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGV4]

Coordinates

chrLK032018:-:688530..690023

Molecular Weight (calculated)

32215.2 Da

IEP (calculated)

9.328

GRAVY (calculated)

-0.134

Length

279 amino acids

Sequence
(BLAST)

001: MNKRNDGYFA VKSIGRCRCV SKLWASTLRL PYFTELFNIR SSARPHLLFV YREKGKFLFL SSPQPQNSSP VLSSRYDFDR CITEHQLLTL GTEKIEWRII
101: QCCVPHYCWL KGICINGVLY YKAKNYRTRT SIIVCFHVMS EKFSCIELDT TFKEAVFNQS MINYNGKLGS VKINRFKLGG THSIELMVIG DSEKLEWSKH
201: TYILPPVLKN VVGKDVLRFA GVTDSNEIVF GHPSCVIYYN IEKNTIVKVR IQGMEAFQST NLSTFLDHKE VDPKLMEAF

Best Arabidopsis Sequence Match ( AT2G19630.1 )
(BLAST)

001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF

Arabidopsis Description

Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.