CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52272	Canola	cytosol	11.72	68.18
CDY15357	Canola	cytosol, nucleus, plastid	20.31	47.27
CDY46037	Canola	extracellular	44.53	41.91
CDY70182	Canola	extracellular	44.53	41.91
CDY18160	Canola	cytosol	57.81	41.57
CDY42092	Canola	cytosol	37.5	34.04
CDY30662	Canola	extracellular, mitochondrion	33.59	31.16
CDX97874	Canola	extracellular	62.5	29.85
CDY19137	Canola	cytosol, mitochondrion, plastid	88.28	27.83
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	66.41	27.69
CDY15336	Canola	plastid	80.47	26.28
CDY15352	Canola	mitochondrion	81.25	25.74
CDY15324	Canola	cytosol	76.56	25.59
CDY15332	Canola	cytosol	76.56	25.13
CDY51358	Canola	cytosol	66.41	22.49
CDY15327	Canola	cytosol	67.19	22.34
Bra021789.1-P	Field mustard	cytosol	88.28	22.16
CDY19134	Canola	mitochondrion	64.06	21.47
CDY60959	Canola	cytosol, mitochondrion, plastid	46.09	21.3
CDX97551	Canola	mitochondrion	63.28	20.66
CDY15333	Canola	mitochondrion	61.72	20.57
CDY60961	Canola	cytosol	63.28	20.4
CDY15359	Canola	cytosol, plastid	63.28	20.35
CDY70684	Canola	cytosol	32.03	20.0
CDY19132	Canola	mitochondrion	57.81	18.83
CDY67625	Canola	mitochondrion	37.5	18.68
CDX79454	Canola	cytosol	42.97	18.27
CDY12239	Canola	mitochondrion	38.28	17.56
CDY65288	Canola	mitochondrion	36.72	17.03
CDY29771	Canola	cytosol, plastid	42.97	16.52
AT3G23960.1	Thale cress	cytosol	51.56	16.42
CDY42091	Canola	mitochondrion	38.28	15.86
CDY19131	Canola	mitochondrion	73.44	15.8
CDY15353	Canola	cytosol	63.28	15.73
CDY52273	Canola	cytosol, plastid	35.94	15.44
CDY12626	Canola	cytosol	44.53	15.24
CDY67859	Canola	cytosol, mitochondrion	43.75	14.81
CDY12627	Canola	cytosol	44.53	14.32
CDY19088	Canola	cytosol	45.31	14.32
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.97	13.58
CDY29942	Canola	cytosol	30.47	13.13
CDY42089	Canola	cytosol	41.41	12.99
CDY42088	Canola	cytosol	40.62	12.71
CDY72470	Canola	golgi, nucleus, plasma membrane	38.28	12.6
CDY05937	Canola	cytosol	32.81	12.43
CDX98860	Canola	cytosol	39.06	12.38
CDY08137	Canola	cytosol	39.06	12.25
CDY72410	Canola	cytosol	35.16	12.13
CDX70134	Canola	cytosol	35.94	11.68
CDY08136	Canola	cytosol	33.59	10.62
CDX83262	Canola	cytosol, mitochondrion	32.03	10.3
CDY31173	Canola	cytosol, mitochondrion	32.03	10.3
CDY29772	Canola	cytosol	32.81	10.29
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.31	10.09
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.38	9.95
CDY66545	Canola	cytosol, peroxisome, plastid	25.0	8.72
CDY15344	Canola	mitochondrion	22.66	8.38
CDY10678	Canola	cytosol	24.22	8.03
CDX79453	Canola	plastid	23.44	7.89
CDY12260	Canola	cytosol	17.19	6.9
CDY66546	Canola	cytosol	13.28	6.8
CDY15342	Canola	cytosol	11.72	6.58
CDY12259	Canola	cytosol	16.41	6.48
CDY26564	Canola	mitochondrion	21.88	6.11
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	5.47	5.56
CDY15999	Canola	cytosol, mitochondrion	27.34	5.43
CDY15358	Canola	cytosol, extracellular, plastid	1.56	1.43
CDY65287	Canola	cytosol	0.78	1.03
CDY00206	Canola	nucleus	0.78	0.55
CDY30661	Canola	cytosol	0.78	0.43

Protein Annotations

EnsemblPlants:CDY15326	EnsemblPlantsGene:GSBRNA2T00085605001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
PFAM:PF08268	ProteinID:CDY15326	ProteinID:CDY15326.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EEBA72	UniProt:A0A078FQ81
MapMan:35.1	:	:	:	:	:

Description

BnaC04g42970DBnaC04g42970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ81]

Coordinates

chrLK032054:+:54163..54549

Molecular Weight (calculated)

14526.5 Da

IEP (calculated)

5.505

GRAVY (calculated)

0.106

Length

128 amino acids

Sequence
(BLAST)

001: MPDSTTLVNY DGKLGLLMSG DSHDVSGART SFELWVVRDA VKHEWFNHIY VLPPSWEDVV AAETMCIAGM VGVNEIVLAP WFQRLPYYVI YFNVERKTIT
101: KVGIQGLEAF HGGSFHTYLN YVENVKLL

Best Arabidopsis Sequence Match ( AT3G23960.1 )
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Arabidopsis Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.