CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90932
CDX96963
CDY14922
CDY18013
CDY21896
CDY22060

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31470.1	CDX96963	AT2G03170.1	18835996
AT2G31470.1	CDY14922	AT2G03170.1	18835996
AT2G31470.1	CDX90932	AT4G02570.1	18835996
AT2G31470.1	CDY18013	AT4G02570.1	18835996
AT2G31470.1	CDY21896	AT4G02570.1	18835996
AT2G31470.1	CDY22060	AT4G02570.1	18835996

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66545	Canola	cytosol, peroxisome, plastid	76.45	57.49
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	77.9	53.88
CDY66546	Canola	cytosol	42.03	46.4
CDY15357	Canola	cytosol, nucleus, plastid	8.33	41.82
CDY70684	Canola	cytosol	30.43	40.98
CDY67625	Canola	mitochondrion	37.68	40.47
AT2G31470.1	Thale cress	cytosol	54.35	38.76
CDY42092	Canola	cytosol	19.2	37.59
CDY70182	Canola	extracellular	18.12	36.76
CDY46037	Canola	extracellular	18.12	36.76
CDY15326	Canola	cytosol	17.03	36.72
CDX98860	Canola	cytosol	53.26	36.39
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	52.9	36.05
CDY19088	Canola	cytosol	51.81	35.31
CDX70134	Canola	cytosol	50.0	35.03
CDY18160	Canola	cytosol	21.74	33.71
CDY29942	Canola	cytosol	35.14	32.66
CDY30662	Canola	extracellular, mitochondrion	16.3	32.61
CDX97874	Canola	extracellular	31.52	32.46
CDY12626	Canola	cytosol	43.12	31.82
CDY52272	Canola	cytosol	2.54	31.82
CDY15324	Canola	cytosol	43.48	31.33
CDY15336	Canola	plastid	43.84	30.87
CDY67859	Canola	cytosol, mitochondrion	41.67	30.42
CDY42089	Canola	cytosol	44.57	30.15
CDY15352	Canola	mitochondrion	43.84	29.95
CDY42088	Canola	cytosol	44.2	29.83
CDY60961	Canola	cytosol	42.03	29.22
CDY15327	Canola	cytosol	40.58	29.09
CDY12239	Canola	mitochondrion	29.35	29.03
CDY15332	Canola	cytosol	40.94	28.97
CDY15359	Canola	cytosol, plastid	40.94	28.39
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	31.52	28.34
CDY19137	Canola	cytosol, mitochondrion, plastid	41.67	28.33
CDY72410	Canola	cytosol	38.04	28.3
CDY19132	Canola	mitochondrion	40.22	28.24
CDY19134	Canola	mitochondrion	38.77	28.01
CDX83262	Canola	cytosol, mitochondrion	40.22	27.89
CDY42091	Canola	mitochondrion	31.16	27.83
CDY05937	Canola	cytosol	34.06	27.81
CDY08136	Canola	cytosol	40.58	27.65
CDX97551	Canola	mitochondrion	39.13	27.55
CDY08137	Canola	cytosol	40.58	27.45
CDY31173	Canola	cytosol, mitochondrion	39.49	27.39
CDX79453	Canola	plastid	37.32	27.11
CDY15333	Canola	mitochondrion	37.32	26.82
CDY29771	Canola	cytosol, plastid	32.25	26.73
CDY12627	Canola	cytosol	38.41	26.63
CDX79454	Canola	cytosol	28.99	26.58
CDY72470	Canola	golgi, nucleus, plasma membrane	36.96	26.22
CDY29772	Canola	cytosol	38.41	25.98
CDY10678	Canola	cytosol	35.14	25.13
CDY51358	Canola	cytosol	34.06	24.87
CDY15344	Canola	mitochondrion	30.8	24.57
CDY52273	Canola	cytosol, plastid	26.45	24.5
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	35.87	22.4
CDY60959	Canola	cytosol, mitochondrion, plastid	21.74	21.66
CDY15353	Canola	cytosol	39.49	21.16
CDY19131	Canola	mitochondrion	42.03	19.5
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.04	18.26
CDY30661	Canola	cytosol	14.86	17.67
CDY12259	Canola	cytosol	19.2	16.36
CDY26564	Canola	mitochondrion	26.09	15.72
CDY12260	Canola	cytosol	17.75	15.36
CDY00206	Canola	nucleus	8.7	13.26
CDY15342	Canola	cytosol	9.42	11.4
CDY15999	Canola	cytosol, mitochondrion	26.45	11.34
CDY15358	Canola	cytosol, extracellular, plastid	2.9	5.71
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	1.45	3.17
CDY65287	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY65288	EnsemblPlantsGene:GSBRNA2T00045533001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF08268	ProteinID:CDY65288	ProteinID:CDY65288.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EE1F9E	UniProt:A0A078JCG0
MapMan:35.1	:	:	:	:	:

Description

BnaAnng20360DBnaAnng20360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCG0]

Coordinates

chrLK034719:+:2305..3135

Molecular Weight (calculated)

31327.3 Da

IEP (calculated)

9.636

GRAVY (calculated)

-0.086

Length

276 amino acids

Sequence
(BLAST)

001: MSGLVCIRDG RILKGRKTAA MVWEICNPST GQSVILPKMK SRKRTGATSF FGYDPTEKQF KVLSMFITKN GISNEHQVLT LAPTGKLSVR IIECSIPHCP
101: QSPGICINGV LYYKSSPNWS SEVDGIMCFD VRSETFRFVR VMEPFIRAVH PRATLINYNG KLASVMSTQS YNYIDEKSTG FVMYVVQDLE KQKWSKHNYE
201: LTHLREYGVA MLLFAGVTVA GEIVLLPKYP SSPFYVFYCS LERKSIRRVE IQGMGGFKQV YTFVNPVEDV KLMQTF

Best Arabidopsis Sequence Match ( AT1G33020.1 )
(BLAST)

001: MNRAENLDSI PTDLILEIFS RMSTKSIGRC RCVSKLWKSM LGHPYFTELF LTRSSDHPRL LFGVKRERQW LFFSSPQPQD LYEKSSLVDF HMNFSDFHMN
101: FSGDIRRNEC TYVSGFIYFP RKRIKNYLCD FRVICNPITG QYAILQLITF HEKRSFLGFD PIDKQFKVLR MKYNDRGIVV HHILTLEPGK MRWRKIRCPL
201: AHEPFWEEIC ANGVLYYLAE PTDGGSYVIC CFDVRSEKFK FIDAKCFGDF SIQLINYKGK LGGISWKYDT VDGKRTVELY MWVLEDVEKQ KWSKYVYPLP
301: GNSYHYSVAG VTAKGDIVFV KTYTSKPFYV FYVNPEKKTF QRVEIHGNHE VFDTNNLVYA FVDHVEDLQF DVMKKTYAAK PISPPKQKPK PPSTETSSRE
401: DHQGWISISS RKYHQVRTIA HRQQGRRKFE SINKFNALYL DDGDEDTVAH QQRDHHTFKS ISKFKAQRLL DDDEFTGVKT SKCDTSHLQN RVTAVHELHI
501: WSITVGKVSL ASQVSIKPEA DTDAILDKVI EYIKRHHVTI QVEKEQNP

Arabidopsis Description

Putative F-box protein At1g33020 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.