Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 90.95 | 47.74 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 19.4 | 32.14 |
| CDY00206 | Canola | nucleus | 23.28 | 29.83 |
| CDY65287 | Canola | cytosol | 11.21 | 26.8 |
| CDY66546 | Canola | cytosol | 28.45 | 26.4 |
| AT1G53790.2 | Thale cress | cytosol | 52.16 | 26.25 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.36 | 24.6 |
| CDY15344 | Canola | mitochondrion | 33.62 | 22.54 |
| CDY31173 | Canola | cytosol, mitochondrion | 38.36 | 22.36 |
| CDY05937 | Canola | cytosol | 32.33 | 22.19 |
| CDX83262 | Canola | cytosol, mitochondrion | 37.93 | 22.11 |
| CDX79453 | Canola | plastid | 35.78 | 21.84 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 25.86 | 21.66 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 36.21 | 21.59 |
| CDY52273 | Canola | cytosol, plastid | 27.16 | 21.14 |
| CDY12259 | Canola | cytosol | 29.31 | 20.99 |
| CDY19134 | Canola | mitochondrion | 34.48 | 20.94 |
| CDY60961 | Canola | cytosol | 35.78 | 20.91 |
| CDY15359 | Canola | cytosol, plastid | 35.78 | 20.85 |
| CDY10678 | Canola | cytosol | 34.48 | 20.73 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 32.76 | 20.71 |
| CDX79454 | Canola | cytosol | 26.72 | 20.6 |
| CDX98860 | Canola | cytosol | 35.78 | 20.54 |
| CDY15332 | Canola | cytosol | 34.48 | 20.51 |
| CDY12260 | Canola | cytosol | 28.02 | 20.38 |
| CDX70134 | Canola | cytosol | 34.48 | 20.3 |
| CDY15352 | Canola | mitochondrion | 34.91 | 20.05 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 34.91 | 20.0 |
| CDY15327 | Canola | cytosol | 33.19 | 20.0 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 34.91 | 19.95 |
| CDY15336 | Canola | plastid | 33.62 | 19.9 |
| CDY15324 | Canola | cytosol | 32.76 | 19.84 |
| CDY42088 | Canola | cytosol | 34.91 | 19.8 |
| CDY15333 | Canola | mitochondrion | 32.76 | 19.79 |
| CDY08136 | Canola | cytosol | 34.48 | 19.75 |
| CDY19088 | Canola | cytosol | 34.48 | 19.75 |
| CDY19132 | Canola | mitochondrion | 33.19 | 19.59 |
| CDY08137 | Canola | cytosol | 34.05 | 19.36 |
| CDY42089 | Canola | cytosol | 33.19 | 18.87 |
| CDY12627 | Canola | cytosol | 32.33 | 18.84 |
| CDX97551 | Canola | mitochondrion | 31.47 | 18.62 |
| CDY12626 | Canola | cytosol | 29.74 | 18.45 |
| CDY67859 | Canola | cytosol, mitochondrion | 29.31 | 17.99 |
| CDY29772 | Canola | cytosol | 31.47 | 17.89 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 23.28 | 17.59 |
| CDY12239 | Canola | mitochondrion | 21.12 | 17.56 |
| CDY72410 | Canola | cytosol | 28.02 | 17.52 |
| CDY42091 | Canola | mitochondrion | 21.55 | 16.18 |
| CDY29942 | Canola | cytosol | 19.4 | 15.15 |
| CDY51358 | Canola | cytosol | 24.57 | 15.08 |
| CDY29771 | Canola | cytosol, plastid | 21.55 | 15.02 |
| CDY65288 | Canola | mitochondrion | 17.67 | 14.86 |
| CDY67625 | Canola | mitochondrion | 15.52 | 14.01 |
| CDY19131 | Canola | mitochondrion | 33.62 | 13.11 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 31.03 | 12.52 |
| CDY15353 | Canola | cytosol | 21.98 | 9.9 |
| CDY70684 | Canola | cytosol | 8.62 | 9.76 |
| CDY26564 | Canola | mitochondrion | 18.1 | 9.17 |
| CDY15999 | Canola | cytosol, mitochondrion | 23.71 | 8.54 |
| CDX97874 | Canola | extracellular | 7.76 | 6.72 |
| CDY15342 | Canola | cytosol | 5.17 | 5.26 |
| CDY46037 | Canola | extracellular | 1.72 | 2.94 |
| CDY70182 | Canola | extracellular | 1.72 | 2.94 |
| CDY18160 | Canola | cytosol | 2.16 | 2.81 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 0.43 | 1.82 |
| CDY30662 | Canola | extracellular, mitochondrion | 0.86 | 1.45 |
| CDY15326 | Canola | cytosol | 0.43 | 0.78 |
| CDY52272 | Canola | cytosol | 0.0 | 0.0 |
| CDY42092 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY30661 | EnsemblPlantsGene:GSBRNA2T00045980001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-assoc_interact_dom |
| InterPro:F-box-like_dom_sf | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | ProteinID:CDY30661 | ProteinID:CDY30661.1 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0004EE6310 | UniProt:A0A078GYT9 | MapMan:35.1 | : | : |
Description
BnaC06g10250DBnaC06g10250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYT9]
Coordinates
chrLK032257:+:231184..231989
Molecular Weight (calculated)
26364.3 Da
IEP (calculated)
8.945
GRAVY (calculated)
-0.151
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPMKNLRQL YLEAQGTQCP NLGIDLPFDL VMEILPRVPA KSIKRFCCVS RLWGYILSLA CFTELFLTKY PCRPPLLLFT FENKESIFFF SAPQPQNPGD
101: DSSLVPARYN VHRKHYPKDF SIRVGSPLGG FICRQDKGKV DTIVVSNPVT GESIFLPEVK SKNINIQMIP FLGYDPINKQ FKVLCVKFED VPNTSDDHQI
201: LTLGNNKKHL WRTTLCKPHY PKSNGICIDG IL
101: DSSLVPARYN VHRKHYPKDF SIRVGSPLGG FICRQDKGKV DTIVVSNPVT GESIFLPEVK SKNINIQMIP FLGYDPINKQ FKVLCVKFED VPNTSDDHQI
201: LTLGNNKKHL WRTTLCKPHY PKSNGICIDG IL
001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM
Arabidopsis Description
F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.