CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15999	Canola	cytosol, mitochondrion	78.6	55.9
CDY15357	Canola	cytosol, nucleus, plastid	3.28	27.27
CDY65288	Canola	mitochondrion	15.72	26.09
CDY52273	Canola	cytosol, plastid	16.38	25.17
CDY66545	Canola	cytosol, peroxisome, plastid	19.87	24.8
CDY15332	Canola	cytosol	20.96	24.62
CDY51358	Canola	cytosol	20.31	24.6
CDY15324	Canola	cytosol	20.52	24.54
CDY70182	Canola	extracellular	7.21	24.26
CDY46037	Canola	extracellular	7.21	24.26
CDY12239	Canola	mitochondrion	14.63	24.01
CDX97551	Canola	mitochondrion	20.52	23.98
CDY15336	Canola	plastid	20.52	23.98
CDY15327	Canola	cytosol	20.09	23.9
CDX97874	Canola	extracellular	13.97	23.88
CDY42089	Canola	cytosol	21.18	23.77
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	15.72	23.45
CDY67625	Canola	mitochondrion	13.1	23.35
CDX98860	Canola	cytosol	20.52	23.27
CDX79454	Canola	cytosol	15.28	23.26
CDY15333	Canola	mitochondrion	19.43	23.18
CDY19134	Canola	mitochondrion	19.21	23.04
CDY70684	Canola	cytosol	10.26	22.93
CDY60961	Canola	cytosol	19.87	22.92
CDY19137	Canola	cytosol, mitochondrion, plastid	20.31	22.91
CDY15359	Canola	cytosol, plastid	19.87	22.86
CDY15344	Canola	mitochondrion	17.25	22.83
CDY52272	Canola	cytosol	1.09	22.73
CDY72470	Canola	golgi, nucleus, plasma membrane	19.21	22.62
CDY12627	Canola	cytosol	19.65	22.61
CDY18160	Canola	cytosol	8.73	22.47
CDY19088	Canola	cytosol	19.87	22.47
CDY10678	Canola	cytosol	18.78	22.28
CDY15352	Canola	mitochondrion	19.65	22.28
CDY19132	Canola	mitochondrion	19.0	22.14
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	19.43	21.98
CDY15326	Canola	cytosol	6.11	21.88
CDX70134	Canola	cytosol	18.78	21.83
CDY42091	Canola	mitochondrion	14.63	21.68
CDY29771	Canola	cytosol, plastid	15.72	21.62
CDY66546	Canola	cytosol	11.79	21.6
CDY31173	Canola	cytosol, mitochondrion	18.56	21.36
CDY29772	Canola	cytosol	19.0	21.32
CDY67859	Canola	cytosol, mitochondrion	17.47	21.16
CDY12626	Canola	cytosol	17.25	21.12
CDY42088	Canola	cytosol	18.78	21.03
CDY30662	Canola	extracellular, mitochondrion	6.33	21.01
CDX83262	Canola	cytosol, mitochondrion	18.12	20.85
CDY42092	Canola	cytosol	6.33	20.57
CDY00206	Canola	nucleus	8.08	20.44
CDY08137	Canola	cytosol	18.12	20.34
CDY60959	Canola	cytosol, mitochondrion, plastid	12.01	19.86
CDY05937	Canola	cytosol	14.63	19.82
CDY29942	Canola	cytosol	12.66	19.53
CDY08136	Canola	cytosol	17.03	19.26
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	18.12	18.78
CDX79453	Canola	plastid	15.5	18.68
CDY72410	Canola	cytosol	15.07	18.6
CDY30661	Canola	cytosol	9.17	18.1
CDY15358	Canola	cytosol, extracellular, plastid	5.46	17.86
CDY65287	Canola	cytosol	3.71	17.53
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	21.83	17.39
CDY19131	Canola	mitochondrion	22.05	16.97
CDY15353	Canola	cytosol	17.9	15.92
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	3.93	14.29
CDY12259	Canola	cytosol	9.39	13.27
CDY12260	Canola	cytosol	8.3	11.91
CDY15342	Canola	cytosol	4.37	8.77

Protein Annotations

Gene3D:2.60.40.200	MapMan:35.1	GO:A0A078GMY6	UniProt:A0A078GMY6	EnsemblPlants:CDY26564	ProteinID:CDY26564
ProteinID:CDY26564.1	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0006801
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00035430001	InterPro:IPR036423
PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	TIGRFAMs:TIGR01640
UniParc:UPI0004EE0883	SEG:seg	:	:	:	:

Description

BnaA09g47130DBnaA09g47130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMY6]

Coordinates

chrLK032192:+:167313..168863

Molecular Weight (calculated)

51400.4 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.061

Length

458 amino acids

Sequence
(BLAST)

001: MGRCVSKTWA SIISRPSFTA LFSSRTRTHL LFVCTLDWAS RFYHGNILMS PLPWTREIFG YFLDVNHQTE LRHKVGDLTF TYVNGLVFDM QPSFCGIHNP
101: STGMSFTVRN SEVVRASISR GGDLGAQSYF GYDPISKTFK ILAMTTADGI SRNHCCHTVR AGERYSWRSI SCGIEHFLMK WKPVCIGGHI FYPAASRSDA
201: PISMVIDFDL NAEEFSSINY FDIQASSEAI LFDYNGSLAS FVLLEHLVSF ALWVLEGRVK QIWVKHVHVI PNLPRDFSGH GFKFVGVIHT NETVWLQSTE
301: IVGPSWSLPT GMFFNTDTKT VKEISFSSFG KSKRKRVGVS VGHIEYMRNP WEEYEAVALL KSSEDEEEGV KGNISFIQEG EKCPTTMALT VYGLKPGTYS
401: ISVNDVVLKT FDVHQNIPFT IEIIDDNQIP LAGEKLIFDK SVSIVTDGGH VVSKGKKN

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.