CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90932
CDX96963
CDY14922
CDY18013
CDY21896
CDY22060

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31470.1	CDX96963	AT2G03170.1	18835996
AT2G31470.1	CDY14922	AT2G03170.1	18835996
AT2G31470.1	CDX90932	AT4G02570.1	18835996
AT2G31470.1	CDY18013	AT4G02570.1	18835996
AT2G31470.1	CDY21896	AT4G02570.1	18835996
AT2G31470.1	CDY22060	AT4G02570.1	18835996

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42092	Canola	cytosol	8.77	14.18
CDY15326	Canola	cytosol	6.58	11.72
CDY67625	Canola	mitochondrion	13.16	11.67
CDY70182	Canola	extracellular	6.58	11.03
CDY46037	Canola	extracellular	6.58	11.03
CDY70684	Canola	cytosol	9.21	10.24
CDY12239	Canola	mitochondrion	11.84	9.68
CDY65288	Canola	mitochondrion	11.4	9.42
CDY30662	Canola	extracellular, mitochondrion	5.7	9.42
CDX79454	Canola	cytosol	12.28	9.3
CDY18160	Canola	cytosol	7.02	8.99
CDY15327	Canola	cytosol	14.91	8.83
CDX97874	Canola	extracellular	10.09	8.58
CDY29942	Canola	cytosol	10.96	8.42
CDY15324	Canola	cytosol	14.04	8.36
CDY15332	Canola	cytosol	14.04	8.21
CDY19088	Canola	cytosol	14.47	8.15
CDY12626	Canola	cytosol	13.16	8.02
CDY67859	Canola	cytosol, mitochondrion	13.16	7.94
CDY15352	Canola	mitochondrion	14.04	7.92
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	14.04	7.9
CDY19137	Canola	cytosol, mitochondrion, plastid	14.04	7.88
CDY08137	Canola	cytosol	14.04	7.84
AT2G31470.1	Thale cress	cytosol	13.16	7.75
CDY52273	Canola	cytosol, plastid	10.09	7.72
CDY72470	Canola	golgi, nucleus, plasma membrane	13.16	7.71
CDX97551	Canola	mitochondrion	13.16	7.65
CDY19132	Canola	mitochondrion	13.16	7.63
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	10.09	7.49
CDY42091	Canola	mitochondrion	10.09	7.44
CDY19134	Canola	mitochondrion	12.28	7.33
CDY72410	Canola	cytosol	11.84	7.28
CDY15357	Canola	cytosol, nucleus, plastid	1.75	7.27
CDY29772	Canola	cytosol	12.72	7.11
CDY05937	Canola	cytosol	10.53	7.1
CDY66545	Canola	cytosol, peroxisome, plastid	11.4	7.08
CDY12627	Canola	cytosol	12.28	7.04
CDX83262	Canola	cytosol, mitochondrion	12.28	7.04
CDY15333	Canola	mitochondrion	11.84	7.03
CDX98860	Canola	cytosol	12.28	6.93
CDY29771	Canola	cytosol, plastid	10.09	6.91
CDY15336	Canola	plastid	11.84	6.89
CDX70134	Canola	cytosol	11.84	6.85
CDY31173	Canola	cytosol, mitochondrion	11.84	6.78
CDY08136	Canola	cytosol	11.84	6.67
CDY60961	Canola	cytosol	11.4	6.55
CDY15359	Canola	cytosol, plastid	11.4	6.53
CDY42089	Canola	cytosol	11.4	6.37
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	12.28	6.33
Bra021702.1-P	Field mustard	cytosol, peroxisome, plastid	10.96	6.27
CDY51358	Canola	cytosol	10.09	6.08
CDY15353	Canola	cytosol	13.16	5.83
CDY10678	Canola	cytosol	9.65	5.7
CDY66546	Canola	cytosol	6.14	5.6
CDX79453	Canola	plastid	9.21	5.53
CDY19131	Canola	mitochondrion	13.6	5.21
CDY30661	Canola	cytosol	5.26	5.17
CDY42088	Canola	cytosol	9.21	5.13
CDY60959	Canola	cytosol, mitochondrion, plastid	6.14	5.05
CDY15344	Canola	mitochondrion	7.02	4.62
CDY52272	Canola	cytosol	0.44	4.55
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	11.4	4.52
CDY26564	Canola	mitochondrion	8.77	4.37
CDY12260	Canola	cytosol	4.39	3.13
CDY15999	Canola	cytosol, mitochondrion	8.77	3.11
CDY12259	Canola	cytosol	3.07	2.16
CDY00206	Canola	nucleus	1.32	1.66
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	0.44	0.79
CDY15358	Canola	cytosol, extracellular, plastid	0.44	0.71
CDY65287	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY15342	EnsemblPlantsGene:GSBRNA2T00085624001	InterPro:F-box-assoc_dom_typ3	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF08268
ProteinID:CDY15342	ProteinID:CDY15342.1	UniParc:UPI0004EE3A48	UniProt:A0A078FR52	MapMan:35.1	:

Description

BnaC04g42810DBnaC04g42810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR52]

Coordinates

chrLK032054:+:156079..161263

Molecular Weight (calculated)

25761.0 Da

IEP (calculated)

6.879

GRAVY (calculated)

-0.125

Length

228 amino acids

Sequence
(BLAST)

001: MISDCLMHRN TSVNLCVLED IGKQEWSEHV YVLPALWEDI VGSASLSFLG MTQTNEIVMR SLAYPPSPLY LFYFNTERNT VVRVAIKGMD VSEYDRVHIF
101: LDHLANVKLL GWKRQLITIS NRCHHGDILE AAGEGNSDMS VRFEDLVLRP SPSRTLPKLL LAYKKGGELF FFSAPQPQNP DANSSPVVGT YHMKLSFDAY
201: FRNRGFQISG VDQGLVGLTN QWFLQGSK

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.