CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15357	Canola	cytosol, nucleus, plastid	15.94	40.0
CDY70182	Canola	extracellular	36.96	37.5
CDY46037	Canola	extracellular	36.96	37.5
CDY15326	Canola	cytosol	31.16	33.59
CDY52272	Canola	cytosol	5.07	31.82
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	93.48	29.19
CDY42092	Canola	cytosol	28.99	28.37
CDY18160	Canola	cytosol	31.16	24.16
CDY70684	Canola	cytosol	28.26	19.02
AT1G53790.2	Thale cress	cytosol	55.8	16.7
CDY67625	Canola	mitochondrion	30.43	16.34
CDY65288	Canola	mitochondrion	32.61	16.3
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	36.23	16.29
CDY12239	Canola	mitochondrion	31.88	15.77
CDX97874	Canola	extracellular	30.43	15.67
CDX79454	Canola	cytosol	31.16	14.29
CDY42091	Canola	mitochondrion	31.16	13.92
CDY29771	Canola	cytosol, plastid	33.33	13.81
CDY12627	Canola	cytosol	39.13	13.57
CDY67859	Canola	cytosol, mitochondrion	35.51	12.96
CDY12626	Canola	cytosol	34.78	12.83
CDY42089	Canola	cytosol	37.68	12.75
CDY15327	Canola	cytosol	35.51	12.73
CDX98860	Canola	cytosol	36.96	12.62
CDY19134	Canola	mitochondrion	34.78	12.57
CDY15336	Canola	plastid	35.51	12.5
CDY15333	Canola	mitochondrion	34.78	12.5
CDY29942	Canola	cytosol	26.81	12.46
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	36.23	12.35
CDY19088	Canola	cytosol	36.23	12.35
CDX70134	Canola	cytosol	34.78	12.18
CDY51358	Canola	cytosol	33.33	12.17
CDY05937	Canola	cytosol	29.71	12.13
CDY15352	Canola	mitochondrion	35.51	12.13
CDY72410	Canola	cytosol	31.88	11.86
CDY15324	Canola	cytosol	32.61	11.75
CDX97551	Canola	mitochondrion	33.33	11.73
CDY60961	Canola	cytosol	33.33	11.59
CDY15359	Canola	cytosol, plastid	33.33	11.56
CDY15332	Canola	cytosol	32.61	11.54
CDY19132	Canola	mitochondrion	32.61	11.45
CDY08137	Canola	cytosol	32.61	11.03
CDY19137	Canola	cytosol, mitochondrion, plastid	31.88	10.84
CDY72470	Canola	golgi, nucleus, plasma membrane	29.71	10.54
CDY31173	Canola	cytosol, mitochondrion	29.71	10.3
CDY08136	Canola	cytosol	29.71	10.12
CDX83262	Canola	cytosol, mitochondrion	28.99	10.05
CDY42088	Canola	cytosol	28.99	9.78
CDY52273	Canola	cytosol, plastid	20.29	9.4
CDY29772	Canola	cytosol	27.54	9.31
CDY15353	Canola	cytosol	32.61	8.74
CDY60959	Canola	cytosol, mitochondrion, plastid	17.39	8.66
CDY10678	Canola	cytosol	23.19	8.29
CDY66545	Canola	cytosol, peroxisome, plastid	21.74	8.17
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	34.06	8.17
CDY19131	Canola	mitochondrion	34.78	8.07
CDY15344	Canola	mitochondrion	17.39	6.94
CDY66546	Canola	cytosol	12.32	6.8
CDY26564	Canola	mitochondrion	21.01	6.33
CDX79453	Canola	plastid	17.39	6.32
CDY15342	Canola	cytosol	9.42	5.7
CDY12260	Canola	cytosol	13.04	5.64
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	5.07	5.56
CDY12259	Canola	cytosol	11.59	4.94
CDY15999	Canola	cytosol, mitochondrion	20.29	4.35
CDY00206	Canola	nucleus	1.45	1.1
CDY65287	Canola	cytosol	0.72	1.03
CDY30661	Canola	cytosol	1.45	0.86
CDY15358	Canola	cytosol, extracellular, plastid	0.72	0.71

Protein Annotations

EnsemblPlants:CDY30662	EnsemblPlantsGene:GSBRNA2T00045981001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
PFAM:PF08268	ProteinID:CDY30662	ProteinID:CDY30662.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EE5C6C	UniProt:A0A078GZK6
MapMan:35.1	:	:	:	:	:

Description

BnaC06g10260DBnaC06g10260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZK6]

Coordinates

chrLK032257:+:232048..232554

Molecular Weight (calculated)

15674.2 Da

IEP (calculated)

8.568

GRAVY (calculated)

0.129

Length

138 amino acids

Sequence
(BLAST)

001: MFMTCACTLI NYKGKLGALQ FTLSNPRCLV FWVLEDAGKC KWSKCVYTIP PLWNKIVGRS DLDIVGVTSG GEVVLATMHL LHPFCIYYYN PKGNTFIRVL
101: IQGLEGFVRA RVYTSLDYAE NLKHMTEYDK GVNTNIYS

Best Arabidopsis Sequence Match ( AT1G53790.2 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLMTDYDRG FNTFSPQGRL F

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.