CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52272	Canola	cytosol	6.14	77.27
Bra021769.1-P	Field mustard	cytosol	95.31	65.19
CDY15352	Canola	mitochondrion	82.31	56.44
CDY15324	Canola	cytosol	77.62	56.14
CDY19137	Canola	cytosol, mitochondrion, plastid	81.59	55.66
CDY15332	Canola	cytosol	77.62	55.13
CDY15358	Canola	cytosol, extracellular, plastid	27.08	53.57
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	23.1	50.79
CDY15336	Canola	plastid	68.59	48.47
CDY15326	Canola	cytosol	21.3	46.09
CDY51358	Canola	cytosol	59.93	43.92
CDY15359	Canola	cytosol, plastid	62.82	43.72
CDY60961	Canola	cytosol	61.73	43.07
CDY19134	Canola	mitochondrion	58.84	42.67
CDY15333	Canola	mitochondrion	57.4	41.41
CDX97551	Canola	mitochondrion	58.12	41.07
CDY19132	Canola	mitochondrion	56.68	39.95
CDY15327	Canola	cytosol	53.79	38.7
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	42.6	38.44
CDY65287	Canola	cytosol	13.0	37.11
CDY66546	Canola	cytosol	32.49	36.0
CDY00206	Canola	nucleus	21.3	32.6
CDY52273	Canola	cytosol, plastid	33.57	31.21
CDX97874	Canola	extracellular	29.96	30.97
CDY19131	Canola	mitochondrion	65.34	30.42
AT3G23960.1	Thale cress	cytosol	44.04	30.35
CDX98860	Canola	cytosol	40.07	27.48
CDY42089	Canola	cytosol	40.43	27.45
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.71	27.16
CDY19088	Canola	cytosol	39.71	27.16
CDY12627	Canola	cytosol	37.91	26.38
CDY42088	Canola	cytosol	38.63	26.16
CDY12259	Canola	cytosol	30.32	25.93
CDY30661	Canola	cytosol	21.66	25.86
CDX79453	Canola	plastid	35.38	25.79
CDY15344	Canola	mitochondrion	32.13	25.72
CDX79454	Canola	cytosol	27.8	25.58
CDX70134	Canola	cytosol	36.1	25.38
CDY12260	Canola	cytosol	28.88	25.08
CDY46037	Canola	extracellular	12.27	25.0
CDY70182	Canola	extracellular	12.27	25.0
CDY12239	Canola	mitochondrion	24.91	24.73
CDY72470	Canola	golgi, nucleus, plasma membrane	34.66	24.68
CDY31173	Canola	cytosol, mitochondrion	35.38	24.62
CDY12626	Canola	cytosol	32.49	24.06
CDX83262	Canola	cytosol, mitochondrion	33.94	23.62
CDY18160	Canola	cytosol	15.16	23.6
CDY67859	Canola	cytosol, mitochondrion	32.13	23.55
CDY29772	Canola	cytosol	34.66	23.53
CDY29771	Canola	cytosol, plastid	28.16	23.42
CDY66545	Canola	cytosol, peroxisome, plastid	30.69	23.16
CDY42092	Canola	cytosol	11.19	21.99
CDY05937	Canola	cytosol	26.71	21.89
CDY08137	Canola	cytosol	32.13	21.81
CDY65288	Canola	mitochondrion	21.66	21.74
CDY42091	Canola	mitochondrion	24.19	21.68
CDY10678	Canola	cytosol	29.24	20.98
CDY72410	Canola	cytosol	27.44	20.49
CDY08136	Canola	cytosol	29.6	20.25
CDY67625	Canola	mitochondrion	18.41	19.84
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.79	19.65
CDY15353	Canola	cytosol	36.1	19.42
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	29.96	18.78
CDY30662	Canola	extracellular, mitochondrion	8.66	17.39
CDY29942	Canola	cytosol	16.61	15.49
CDY70684	Canola	cytosol	10.11	13.66
CDY26564	Canola	mitochondrion	19.86	12.01
CDY15999	Canola	cytosol, mitochondrion	24.55	10.56
CDY15342	Canola	cytosol	5.05	6.14
CDY15357	Canola	cytosol, nucleus, plastid	1.08	5.45

Protein Annotations

EnsemblPlants:CDY60959	EnsemblPlantsGene:GSBRNA2T00030324001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	PFAM:PF00646
ProteinID:CDY60959	ProteinID:CDY60959.1	SUPFAM:SSF81383	UniParc:UPI0004EF0655	UniProt:A0A078J7E3	MapMan:35.1

Description

BnaA04g28880DBnaA04g28880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7E3]

Coordinates

chrLK033937:-:8205..9422

Molecular Weight (calculated)

31916.9 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.242

Length

277 amino acids

Sequence
(BLAST)

001: MQPPRQNVSK GGELTNYRGV TRSMTRRHRN SLPVPDELAM EIFSRLPSKA MAMCRCACKL WSSMLRRQDF TELFLTKSCA RPQLLFFRED HSVREFVFIS
101: SPQPENPQEN SYVVASNPLA CFPRSSGFYG CTNGFFCYGA DRFFKRLKFP VCVPVICNPS TGQSLTMPRL ISKKRYGVQS YLGYEPIEKE LKLLSMNNSL
201: NGPIMYTYYH LQTMCIAGMV GTNEIVFSPI YQRVPYYVIY FNVERRTITK VGIQGLEAFQ GKSFKTYLNY VENVKLL

Best Arabidopsis Sequence Match ( AT2G31470.2 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SECTWRGLVN FCWNDWYK

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.