CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021780.1-P	Field mustard	mitochondrion	97.98	97.98
CDY15336	Canola	plastid	55.46	84.18
CDY15332	Canola	cytosol	49.92	76.15
CDY15326	Canola	cytosol	15.8	73.44
CDY19137	Canola	cytosol, mitochondrion, plastid	49.75	72.91
CDY15324	Canola	cytosol	46.89	72.85
CDY15352	Canola	mitochondrion	49.24	72.52
CDY60961	Canola	cytosol	43.87	65.74
CDY60959	Canola	cytosol, mitochondrion, plastid	30.42	65.34
CDY15359	Canola	cytosol, plastid	43.7	65.33
CDY19134	Canola	mitochondrion	41.01	63.87
CDX97551	Canola	mitochondrion	41.68	63.27
CDY52273	Canola	cytosol, plastid	31.26	62.42
CDY15333	Canola	mitochondrion	40.17	62.24
CDY15327	Canola	cytosol	39.33	60.78
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	30.92	59.93
CDY19132	Canola	mitochondrion	39.5	59.8
CDY15357	Canola	cytosol, nucleus, plastid	5.38	58.18
CDY51358	Canola	cytosol	36.81	57.94
CDY15358	Canola	cytosol, extracellular, plastid	13.11	55.71
CDY18160	Canola	cytosol	16.64	55.62
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	11.76	55.56
CDX97874	Canola	extracellular	23.53	52.24
AT3G23960.1	Thale cress	cytosol	30.08	44.53
CDX79454	Canola	cytosol	22.35	44.19
CDY65288	Canola	mitochondrion	19.5	42.03
CDY15344	Canola	mitochondrion	24.37	41.91
CDY12239	Canola	mitochondrion	19.5	41.58
CDY42089	Canola	cytosol	28.07	40.93
CDY66546	Canola	cytosol	17.14	40.8
CDX98860	Canola	cytosol	27.56	40.59
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.56	40.49
CDY66545	Canola	cytosol, peroxisome, plastid	24.87	40.33
CDY19088	Canola	cytosol	27.39	40.25
CDY46037	Canola	extracellular	9.08	39.71
CDY70182	Canola	extracellular	9.08	39.71
CDX70134	Canola	cytosol	26.05	39.34
CDY29771	Canola	cytosol, plastid	22.02	39.34
CDY42092	Canola	cytosol	9.24	39.01
CDY72470	Canola	golgi, nucleus, plasma membrane	25.21	38.56
CDY42091	Canola	mitochondrion	20.0	38.51
CDY65287	Canola	cytosol	6.22	38.14
CDY67625	Canola	mitochondrion	16.47	38.13
CDY42088	Canola	cytosol	25.71	37.41
CDY12627	Canola	cytosol	24.87	37.19
CDY12626	Canola	cytosol	23.19	36.9
CDY67859	Canola	cytosol, mitochondrion	23.03	36.24
CDY00206	Canola	nucleus	10.76	35.36
CDY29772	Canola	cytosol	24.2	35.29
CDY31173	Canola	cytosol, mitochondrion	23.53	35.18
CDY30662	Canola	extracellular, mitochondrion	8.07	34.78
CDY15353	Canola	cytosol	29.58	34.17
CDX83262	Canola	cytosol, mitochondrion	22.86	34.17
CDY70684	Canola	cytosol	11.76	34.15
CDY05937	Canola	cytosol	19.33	34.02
CDY08137	Canola	cytosol	23.19	33.82
CDY30661	Canola	cytosol	13.11	33.62
CDX79453	Canola	plastid	21.34	33.42
CDY08136	Canola	cytosol	22.35	32.84
CDY72410	Canola	cytosol	20.34	32.61
CDY10678	Canola	cytosol	21.01	32.38
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	23.87	32.13
CDY52272	Canola	cytosol	1.18	31.82
CDY29942	Canola	cytosol	15.29	30.64
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.4	29.39
CDY12259	Canola	cytosol	14.29	26.23
CDY12260	Canola	cytosol	13.95	26.02
CDY26564	Canola	mitochondrion	16.97	22.05
CDY15999	Canola	cytosol, mitochondrion	19.5	18.01
CDY15342	Canola	cytosol	5.21	13.6

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.20.1280.50	MapMan:24.3.9	Gene3D:3.40.190.10	GO:A0A078G1G1	UniProt:A0A078G1G1
EnsemblPlants:CDY19131	ProteinID:CDY19131	ProteinID:CDY19131.1	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00006412001	InterPro:IPR001810
InterPro:Iontro_rcpt	PFAM:PF00646	PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00079
SMART:SM00256	SUPFAM:SSF53850	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	TMHMM:TMhelix	UniParc:UPI0004EEF2CF

Description

BnaA04g18710DBnaA04g18710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1G1]

Coordinates

chrLK032092:-:416831..420133

Molecular Weight (calculated)

67168.9 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.157

Length

595 amino acids

Sequence
(BLAST)

001: MTSRRATRSM TSLHRNSLPV PDELVMEIFS RLPSKAMARC RCACKLWSSM LRRQDFTELF LTKSCARPQL LFACNDHSVS KYVFILSPQP ENPEENSHVV
101: ASNHLACFPS SYELFGCTNG FLCYGAKPIL EGRINPAYVP VICNPSTGQS LILPTLKSRM RFGIESYLGY EPIAKEFKVL SMESSYVSGH SVRHQVLTLG
201: TKKLSWRLVE CCIPHRSSSQ WICISGVLYY AARAVGSSVN SMVVCFDLRS EKFSSVKFGK AMPDSTTLVN YDGKLGLLMS GDSHDVTRSR TSLELWVLRD
301: AAKQEWSKHV YVLPSSWEDV VSEDMCIAGM VGVNEIVLAP WSQRVPSYVI YFNVERKTIT KVGIQGPEAF TAPNLHHSLG MGRSRLVPLD SIEEYERALK
401: LGPNALGGVA AIVDELPYIE LFLAERTGFK IVGEPFMNRG WGFVFKRDSS LAIDMSTAIL KLTETREQKR ILKKWLCQKS CGEKSDWNHP EPNQFHLKSF
501: EGLYLFCVAI TVSAFLVFVL RMIRQFVRYR RSERTSLTPR ASLSSSPRTT RLWGFMLGFV EFVDEEEEAT RSDDDSNNNP SQVVELQGDS EVRQS

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.