Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021730.1-P | Field mustard | cytosol | 99.75 | 99.75 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 85.43 | 85.43 |
| CDY46037 | Canola | extracellular | 17.53 | 52.21 |
| CDY70182 | Canola | extracellular | 17.53 | 52.21 |
| AT2G31470.1 | Thale cress | cytosol | 49.88 | 52.2 |
| CDY65288 | Canola | mitochondrion | 35.31 | 51.81 |
| CDX70134 | Canola | cytosol | 47.65 | 48.98 |
| CDX98860 | Canola | cytosol | 48.4 | 48.51 |
| CDY66546 | Canola | cytosol | 29.63 | 48.0 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 42.96 | 47.41 |
| CDY15326 | Canola | cytosol | 14.32 | 45.31 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 15.56 | 45.0 |
| CDY67625 | Canola | mitochondrion | 28.4 | 44.75 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 33.83 | 44.63 |
| CDY15336 | Canola | plastid | 42.96 | 44.39 |
| CDY42088 | Canola | cytosol | 44.44 | 44.01 |
| CDY18160 | Canola | cytosol | 19.26 | 43.82 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 5.93 | 43.64 |
| CDY29771 | Canola | cytosol, plastid | 35.56 | 43.24 |
| CDY15333 | Canola | mitochondrion | 40.99 | 43.23 |
| CDY19134 | Canola | mitochondrion | 40.49 | 42.93 |
| CDY42089 | Canola | cytosol | 42.96 | 42.65 |
| CDY52273 | Canola | cytosol, plastid | 31.36 | 42.62 |
| CDY15332 | Canola | cytosol | 40.99 | 42.56 |
| CDY15324 | Canola | cytosol | 40.25 | 42.56 |
| CDY12627 | Canola | cytosol | 41.73 | 42.46 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 42.47 | 42.36 |
| CDY15327 | Canola | cytosol | 40.25 | 42.34 |
| CDY12626 | Canola | cytosol | 39.01 | 42.25 |
| CDX79454 | Canola | cytosol | 31.36 | 42.19 |
| CDX97551 | Canola | mitochondrion | 40.74 | 42.09 |
| CDY12239 | Canola | mitochondrion | 28.89 | 41.94 |
| CDY67859 | Canola | cytosol, mitochondrion | 38.52 | 41.27 |
| CDY15352 | Canola | mitochondrion | 40.99 | 41.09 |
| CDY70684 | Canola | cytosol | 20.74 | 40.98 |
| CDY60961 | Canola | cytosol | 39.75 | 40.55 |
| CDY51358 | Canola | cytosol | 37.78 | 40.48 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.59 | 40.48 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 38.77 | 40.36 |
| CDY42091 | Canola | mitochondrion | 30.37 | 39.81 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 27.16 | 39.71 |
| CDY15359 | Canola | cytosol, plastid | 39.01 | 39.7 |
| CDX83262 | Canola | cytosol, mitochondrion | 38.77 | 39.45 |
| CDY19132 | Canola | mitochondrion | 38.02 | 39.19 |
| CDY15344 | Canola | mitochondrion | 33.33 | 39.02 |
| CDY42092 | Canola | cytosol | 13.58 | 39.01 |
| CDY31173 | Canola | cytosol, mitochondrion | 38.27 | 38.94 |
| CDY29772 | Canola | cytosol | 38.77 | 38.48 |
| CDY72410 | Canola | cytosol | 35.06 | 38.27 |
| CDY08137 | Canola | cytosol | 38.52 | 38.24 |
| CDY65287 | Canola | cytosol | 9.14 | 38.14 |
| CDX79453 | Canola | plastid | 35.56 | 37.89 |
| CDY05937 | Canola | cytosol | 31.6 | 37.87 |
| CDY10678 | Canola | cytosol | 35.8 | 37.56 |
| CDY08136 | Canola | cytosol | 37.53 | 37.53 |
| CDX97874 | Canola | extracellular | 24.44 | 36.94 |
| CDY00206 | Canola | nucleus | 16.3 | 36.46 |
| CDY52272 | Canola | cytosol | 1.98 | 36.36 |
| CDY30662 | Canola | extracellular, mitochondrion | 12.35 | 36.23 |
| CDY29942 | Canola | cytosol | 25.93 | 35.35 |
| CDY30661 | Canola | cytosol | 19.75 | 34.48 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 35.31 | 32.35 |
| CDY12259 | Canola | cytosol | 24.94 | 31.17 |
| CDY12260 | Canola | cytosol | 24.2 | 30.72 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 39.51 | 27.83 |
| CDY19131 | Canola | mitochondrion | 40.25 | 27.39 |
| CDY15353 | Canola | cytosol | 33.09 | 26.02 |
| CDY26564 | Canola | mitochondrion | 22.47 | 19.87 |
| CDY15999 | Canola | cytosol, mitochondrion | 25.43 | 15.99 |
| CDY15342 | Canola | cytosol | 8.15 | 14.47 |
Protein Annotations
| EnsemblPlants:CDY19088 | EnsemblPlantsGene:GSBRNA2T00006364001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-assoc_dom_typ3 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| PFAM:PF00646 | PFAM:PF08268 | ProteinID:CDY19088 | ProteinID:CDY19088.1 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI0004EE8EFB | UniProt:A0A078G363 | MapMan:35.1 | : | : | : |
Description
BnaA04g18280DBnaA04g18280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G363]
Coordinates
chrLK032092:+:200432..201649
Molecular Weight (calculated)
46606.3 Da
IEP (calculated)
9.244
GRAVY (calculated)
-0.230
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSPRYNDVS ENPQTILRCH SRYSSPISID LIIEILLRLP LNSIARCRCV SKLLASILVR LDFTDSFLAS SLSRPQVLFA CQKQFTNDVM FYFSTPQPQN
101: PDENSSTIVA NYHMSFPFDS PSLCSAVSGF VCTDDFRVIK GQKTPRRVWV ICNPSTGQSF TLPKMKTRKR IWIRCFLGYD PIEKQHKALA MTSQVTKAED
201: HQVLTLGGTD KLAWRRIECG IPQYGYPGPR NICINGVLYF KAKAKNSSNG DDIIVCFDVR SEKYNFVKVM ERLVHPRATL VNYNGKLASV ISQSHYHFIY
301: DTTRSFEMWV LQDSEKHEWS KHIYILPPLW KHISAGQNLY FVGVTGADEI VLCPKSLFRE PFYVYYYNLK RGTIRRVEIQ GLEKLEGSYT VDTFLNHVED
401: VKILK
101: PDENSSTIVA NYHMSFPFDS PSLCSAVSGF VCTDDFRVIK GQKTPRRVWV ICNPSTGQSF TLPKMKTRKR IWIRCFLGYD PIEKQHKALA MTSQVTKAED
201: HQVLTLGGTD KLAWRRIECG IPQYGYPGPR NICINGVLYF KAKAKNSSNG DDIIVCFDVR SEKYNFVKVM ERLVHPRATL VNYNGKLASV ISQSHYHFIY
301: DTTRSFEMWV LQDSEKHEWS KHIYILPPLW KHISAGQNLY FVGVTGADEI VLCPKSLFRE PFYVYYYNLK RGTIRRVEIQ GLEKLEGSYT VDTFLNHVED
401: VKILK
001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI
Arabidopsis Description
DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.