CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12626	Canola	cytosol	94.97	95.99
Bra034016.1-P	Field mustard	cytosol	94.44	88.81
CDY70182	Canola	extracellular	28.31	78.68
CDY46037	Canola	extracellular	28.31	78.68
CDY12627	Canola	cytosol	70.63	67.09
CDY67625	Canola	mitochondrion	31.48	46.3
CDY15326	Canola	cytosol	14.81	43.75
CDY70684	Canola	cytosol	23.28	42.93
CDY15357	Canola	cytosol, nucleus, plastid	6.08	41.82
CDY65288	Canola	mitochondrion	30.42	41.67
CDY18160	Canola	cytosol	19.58	41.57
CDY42088	Canola	cytosol	44.71	41.32
CDX70134	Canola	cytosol	42.06	40.36
CDY42092	Canola	cytosol	14.55	39.01
CDY19134	Canola	mitochondrion	39.15	38.74
CDY19088	Canola	cytosol	41.27	38.52
CDY42089	Canola	cytosol	41.01	37.99
CDY52273	Canola	cytosol, plastid	29.89	37.92
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	40.48	37.78
CDX98860	Canola	cytosol	40.21	37.62
CDY15324	Canola	cytosol	38.1	37.6
CDY29771	Canola	cytosol, plastid	33.07	37.54
CDX97551	Canola	mitochondrion	38.62	37.24
CDY15333	Canola	mitochondrion	37.57	36.98
CDY15332	Canola	cytosol	38.1	36.92
CDY60961	Canola	cytosol	38.62	36.78
CDY15344	Canola	mitochondrion	33.6	36.71
CDY15336	Canola	plastid	37.83	36.48
CDY15359	Canola	cytosol, plastid	38.36	36.43
CDY05937	Canola	cytosol	32.54	36.39
CDY52272	Canola	cytosol	2.12	36.36
CDY08137	Canola	cytosol	39.15	36.27
CDY15352	Canola	mitochondrion	38.62	36.14
CDX79453	Canola	plastid	36.24	36.05
CDY19137	Canola	cytosol, mitochondrion, plastid	38.62	35.96
CDY15327	Canola	cytosol	36.51	35.84
CDY12239	Canola	mitochondrion	26.45	35.84
CDY66545	Canola	cytosol, peroxisome, plastid	34.66	35.69
CDX83262	Canola	cytosol, mitochondrion	37.57	35.68
AT3G61340.2	Thale cress	cytosol	41.01	35.63
CDY66546	Canola	cytosol	23.55	35.6
CDY72410	Canola	cytosol	34.92	35.58
CDX79454	Canola	cytosol	28.31	35.55
CDY30662	Canola	extracellular, mitochondrion	12.96	35.51
CDY19132	Canola	mitochondrion	36.77	35.37
CDY42091	Canola	mitochondrion	28.84	35.28
CDY31173	Canola	cytosol, mitochondrion	37.04	35.18
CDY08136	Canola	cytosol	37.57	35.06
CDY29772	Canola	cytosol	37.83	35.05
CDY10678	Canola	cytosol	35.71	34.97
CDY72470	Canola	golgi, nucleus, plasma membrane	35.98	34.96
CDX97874	Canola	extracellular	24.34	34.33
CDY29942	Canola	cytosol	26.72	34.01
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	27.51	33.88
CDY51358	Canola	cytosol	33.6	33.6
CDY60959	Canola	cytosol, mitochondrion, plastid	23.55	32.13
CDY00206	Canola	nucleus	14.55	30.39
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	34.66	29.64
CDY30661	Canola	cytosol	17.99	29.31
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.48	26.61
CDY15358	Canola	cytosol, extracellular, plastid	9.79	26.43
CDY15353	Canola	cytosol	33.86	24.85
CDY65287	Canola	cytosol	6.35	24.74
CDY12259	Canola	cytosol	20.9	24.38
CDY12260	Canola	cytosol	20.11	23.82
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	7.94	23.81
CDY19131	Canola	mitochondrion	36.24	23.03
CDY26564	Canola	mitochondrion	21.16	17.47
CDY15999	Canola	cytosol, mitochondrion	25.13	14.75
CDY15342	Canola	cytosol	7.94	13.16

Protein Annotations

EnsemblPlants:CDY67859	EnsemblPlantsGene:GSBRNA2T00067574001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF08268	ProteinID:CDY67859	ProteinID:CDY67859.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EE23BB	UniProt:A0A078JM22
MapMan:35.1	:	:	:	:	:

Description

BnaAnng25370DBnaAnng25370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM22]

Coordinates

chrLK036587:-:5412..6632

Molecular Weight (calculated)

42950.1 Da

IEP (calculated)

8.831

GRAVY (calculated)

-0.131

Length

378 amino acids

Sequence
(BLAST)

001: MKTRRQHAAE NALTISRRST RSPLSNGNSE TIPTDLIIEV LLRLPPKSRA RPQLLLSCVE NEDLFLSSIP QEVQNQDVVT ANYHTRFPCG RSSKIIGPVR
101: GLVCLTHLRK YKKTAPVICN PSTGQSLPLP NVKTRSILVN SFLGFDPVGK QFKILSMTTR DYLNCEEHQV LTLGTEKKMS WRKIQCSISH YFRHINHGIC
201: INGVVYYVAG LNGPPMANGI VFFDVRSEKF KVINRGEEMA LWSQSTLVNY KGTLGALLTE GFTQVTGDTK CFQLWVLVDA EKHEWSKHIS ICLPLLWKNI
301: VANATLFFVG VTGTDEIVLS PHYVSYLSEE PYCFHVYYYN IESNAIRRVE IQGMDAFRHC EIRLSLNHVE DVKLLQYI

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.