CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005628.1-P	Field mustard	cytosol	98.77	98.77
CDY65287	Canola	cytosol	11.27	47.42
CDY15357	Canola	cytosol, nucleus, plastid	6.37	47.27
CDY60961	Canola	cytosol	44.85	46.1
CDY15359	Canola	cytosol, plastid	44.61	45.73
CDY70182	Canola	extracellular	15.2	45.59
CDY46037	Canola	extracellular	15.2	45.59
CDY15336	Canola	plastid	43.14	44.9
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	33.58	44.63
CDY65288	Canola	mitochondrion	30.15	44.57
CDY15332	Canola	cytosol	42.16	44.1
CDY19134	Canola	mitochondrion	41.18	43.98
CDY15327	Canola	cytosol	41.42	43.9
CDY12239	Canola	mitochondrion	29.9	43.73
CDY15324	Canola	cytosol	40.93	43.6
CDY19132	Canola	mitochondrion	41.91	43.51
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.89	43.21
CDX79454	Canola	cytosol	31.86	43.19
CDX70134	Canola	cytosol	41.67	43.15
CDY15333	Canola	mitochondrion	40.44	42.97
CDY19088	Canola	cytosol	42.65	42.96
CDY18160	Canola	cytosol	18.63	42.7
CDY29771	Canola	cytosol, plastid	34.8	42.64
CDY19137	Canola	cytosol, mitochondrion, plastid	42.16	42.36
CDY15352	Canola	mitochondrion	41.91	42.33
CDY52273	Canola	cytosol, plastid	30.88	42.28
CDY66545	Canola	cytosol, peroxisome, plastid	37.99	42.23
CDX98860	Canola	cytosol	41.67	42.08
CDY67625	Canola	mitochondrion	26.47	42.02
CDY66546	Canola	cytosol	25.74	42.0
CDY12626	Canola	cytosol	38.48	41.98
CDY72470	Canola	golgi, nucleus, plasma membrane	39.95	41.9
CDY15326	Canola	cytosol	12.99	41.41
CDY51358	Canola	cytosol	38.24	41.27
CDY42091	Canola	mitochondrion	31.13	41.1
CDY67859	Canola	cytosol, mitochondrion	37.99	41.01
CDY12627	Canola	cytosol	39.95	40.95
CDY52272	Canola	cytosol	2.21	40.91
CDY15344	Canola	mitochondrion	34.56	40.75
CDX97551	Canola	mitochondrion	38.97	40.56
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	12.5	40.48
CDY60959	Canola	cytosol, mitochondrion, plastid	27.45	40.43
CDY42092	Canola	cytosol	13.97	40.43
CDY42088	Canola	cytosol	40.2	40.1
CDY15358	Canola	cytosol, extracellular, plastid	13.73	40.0
CDY70684	Canola	cytosol	20.1	40.0
CDY29772	Canola	cytosol	39.95	39.95
CDY08137	Canola	cytosol	38.48	38.48
CDX83262	Canola	cytosol, mitochondrion	37.01	37.94
CDY31173	Canola	cytosol, mitochondrion	36.76	37.69
CDY30662	Canola	extracellular, mitochondrion	12.75	37.68
CDX97874	Canola	extracellular	24.51	37.31
CDX79453	Canola	plastid	34.31	36.84
CDY72410	Canola	cytosol	33.33	36.66
CDY10678	Canola	cytosol	34.56	36.53
CDY08136	Canola	cytosol	35.54	35.8
CDY05937	Canola	cytosol	29.66	35.8
CDY00206	Canola	nucleus	15.69	35.36
CDY29942	Canola	cytosol	25.0	34.34
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	36.52	33.71
CDY30661	Canola	cytosol	18.87	33.19
CDY12259	Canola	cytosol	23.04	29.01
CDY12260	Canola	cytosol	22.55	28.84
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.95	28.35
CDY19131	Canola	mitochondrion	40.93	28.07
CDY15353	Canola	cytosol	33.33	26.41
CDY26564	Canola	mitochondrion	23.77	21.18
CDY15999	Canola	cytosol, mitochondrion	26.47	16.77
CDY15342	Canola	cytosol	6.37	11.4

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078HXN1	EnsemblPlants:CDY42089	ProteinID:CDY42089	ProteinID:CDY42089.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00074130001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFAM:PF08268	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE74D2

Description

BnaA05g10970DBnaA05g10970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXN1]

Coordinates

chrLK032514:+:151888..153114

Molecular Weight (calculated)

46798.8 Da

IEP (calculated)

9.520

GRAVY (calculated)

-0.213

Length

408 amino acids

Sequence
(BLAST)

001: MKSQRQNDTE VCLTITRLTK LSKNSTNVRE DLLPTDLLIE IFSRFPTKHI AKYIATCRCV SKLWSSIFYR PEFTDVLFLT KSSASPQLLF ACQTQSELLF
101: LSSPQPQDPV ENPSLVTASC LTKVPVNFSN ESFSTINGFL CLRYDIVKER KSSKMQFICN PSTGQRLPLP KMKTVGQKSY FGYDPIGKQY KLFSMTSSND
201: KYKGNWKEYR ILTLGTQKLS WRRKECCVPH CPVHNEICIN GLLYYRANGD GFTKATMIVC FDFRSEKFSF MKVTENFSRA VDHKATLINY NGKLGSLRWE
301: EPYSLSRGTG SFVLWVLQDA EKHKWSKHVY VLPPLGIELA EMAELYFVGV IGTDEIVLSL DIPAKPFYLF YYNIKRSSIV RVEIQGIQAL KGRSVRTLLN
401: HVENVNLM

Best Arabidopsis Sequence Match ( AT1G53790.1 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.