CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole, cytosol

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021772.1-P	Field mustard	plastid	97.07	76.41
CDY15357	Canola	cytosol, nucleus, plastid	12.7	70.91
CDY15326	Canola	cytosol	27.69	66.41
CDY52272	Canola	cytosol	4.56	63.64
CDY15358	Canola	cytosol, extracellular, plastid	27.36	60.0
CDY18160	Canola	cytosol	31.92	55.06
CDY15327	Canola	cytosol	67.1	53.51
CDY15336	Canola	plastid	66.12	51.79
CDY15324	Canola	cytosol	63.52	50.91
CDY15332	Canola	cytosol	62.87	49.49
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	20.2	49.21
CDY15352	Canola	mitochondrion	63.52	48.27
CDY19134	Canola	mitochondrion	58.96	47.38
CDY15359	Canola	cytosol, plastid	61.24	47.24
CDY60961	Canola	cytosol	60.91	47.1
CDY19137	Canola	cytosol, mitochondrion, plastid	62.22	47.04
CDY52273	Canola	cytosol, plastid	45.28	46.64
CDY15333	Canola	mitochondrion	57.65	46.09
CDX97551	Canola	mitochondrion	57.65	45.15
CDY51358	Canola	cytosol	54.72	44.44
CDY46037	Canola	extracellular	19.22	43.38
CDY70182	Canola	extracellular	19.22	43.38
CDX79454	Canola	cytosol	42.35	43.19
CDY60959	Canola	cytosol, mitochondrion, plastid	38.44	42.6
CDY12239	Canola	mitochondrion	38.11	41.94
CDY19132	Canola	mitochondrion	52.77	41.22
CDY42092	Canola	cytosol	18.24	39.72
CDY65287	Canola	cytosol	12.38	39.18
CDY42091	Canola	mitochondrion	39.41	39.16
CDX97874	Canola	extracellular	33.88	38.81
CDY29771	Canola	cytosol, plastid	41.37	38.14
CDY30662	Canola	extracellular, mitochondrion	16.29	36.23
AT3G23960.1	Thale cress	cytosol	46.25	35.32
CDY70684	Canola	cytosol	23.45	35.12
CDY19088	Canola	cytosol	44.63	33.83
CDX98860	Canola	cytosol	44.3	33.66
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	44.3	33.58
CDY42089	Canola	cytosol	44.63	33.58
CDY72470	Canola	golgi, nucleus, plasma membrane	42.35	33.42
CDX70134	Canola	cytosol	41.69	32.49
CDY65288	Canola	mitochondrion	28.34	31.52
CDY15344	Canola	mitochondrion	35.18	31.21
CDY19131	Canola	mitochondrion	59.93	30.92
CDY12627	Canola	cytosol	40.07	30.9
CDY42088	Canola	cytosol	41.04	30.81
CDY66545	Canola	cytosol, peroxisome, plastid	36.48	30.52
CDY67625	Canola	mitochondrion	25.41	30.35
CDY08137	Canola	cytosol	40.07	30.15
CDY29772	Canola	cytosol	39.74	29.9
CDY12626	Canola	cytosol	35.5	29.14
CDY31173	Canola	cytosol, mitochondrion	37.13	28.64
CDX83262	Canola	cytosol, mitochondrion	36.81	28.39
CDY72410	Canola	cytosol	34.2	28.3
CDY15353	Canola	cytosol	46.58	27.77
CDX79453	Canola	plastid	34.2	27.63
CDY67859	Canola	cytosol, mitochondrion	33.88	27.51
CDY08136	Canola	cytosol	35.83	27.16
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	38.44	26.7
CDY00206	Canola	nucleus	15.64	26.52
CDY66546	Canola	cytosol	21.17	26.0
CDY29942	Canola	cytosol	25.08	25.93
CDY05937	Canola	cytosol	28.34	25.74
CDY10678	Canola	cytosol	31.27	24.87
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.97	23.48
CDY30661	Canola	cytosol	17.59	23.28
CDY12260	Canola	cytosol	22.15	21.32
CDY12259	Canola	cytosol	21.17	20.06
CDY26564	Canola	mitochondrion	23.45	15.72
CDY15999	Canola	cytosol, mitochondrion	27.36	13.04
CDY15342	Canola	cytosol	7.49	10.09

Protein Annotations

EnsemblPlants:CDY60955	EnsemblPlantsGene:GSBRNA2T00030320001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
PFAM:PF00646	PFAM:PF08268	ProteinID:CDY60955	ProteinID:CDY60955.1	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EDBDE1	UniProt:A0A078J9X6	MapMan:35.1	:	:

Description

BnaA04g28850DBnaA04g28850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9X6]

Coordinates

chrLK033937:-:1809..2981

Molecular Weight (calculated)

34613.7 Da

IEP (calculated)

5.745

GRAVY (calculated)

0.058

Length

307 amino acids

Sequence
(BLAST)

001: MNVSVLTISP PVMGSSLPIP DDLVFEIFSR LPSKAIARCR CVSKLLASML RSHYFTELFL TKSCARPQLL FAFEDDSEVV FFSSPQPENP EENSYVLAAN
101: QLARIPSSYG LSAPTRTEKL SWRLVECSIP HCPSTKWICI NGVLYYTATA GYWSSMVVCF DFKSEKFSFV NFMEASGKEM HGSTTLINYN GKLGLLMSED
201: TGYDYICGAS KSLELWVLRD AGKNEWSEHV YVLPPSWEDV VSAMSISGMV GTNEIVLAPL FRNVPPYVIY YNVERKTITK VGIQVMEALQ GKRFYTFLNY
301: VEDVKFL

Best Arabidopsis Sequence Match ( AT2G19630.1 )
(BLAST)

001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF

Arabidopsis Description

Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.