Factsheet for AT3G23960.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15357	Canola	cytosol, nucleus, plastid	7.21	52.73
CDY15326	Canola	cytosol	16.42	51.56
CDY52272	Canola	cytosol	2.74	50.0
CDY15332	Canola	cytosol	47.01	48.46
CDY15336	Canola	plastid	46.77	47.96
AT2G31470.1	Thale cress	cytosol	46.02	47.8
CDY19137	Canola	cytosol, mitochondrion, plastid	47.76	47.29
Bra021784.1-P	Field mustard	plastid	45.52	47.04
CDY19134	Canola	mitochondrion	44.53	46.86
Bra021785.1-P	Field mustard	mitochondrion	44.53	46.86
CDY52273	Canola	cytosol, plastid	34.58	46.64
CDY15324	Canola	cytosol	44.28	46.48
AT5G65850.1	Thale cress	cytosol, mitochondrion	45.27	46.43
CDY60961	Canola	cytosol	45.77	46.35
Bra021767.1-P	Field mustard	cytosol	45.77	46.35
CDY15352	Canola	mitochondrion	46.52	46.29
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	35.32	46.25
Bra021782.1-P	Field mustard	plastid	44.28	46.11
Bra021769.1-P	Field mustard	cytosol	46.27	45.93
Bra021772.1-P	Field mustard	plastid	44.53	45.9
Bra027364.1-P	Field mustard	mitochondrion	44.53	45.66
CDX97551	Canola	mitochondrion	44.28	45.41
CDY15333	Canola	mitochondrion	43.28	45.31
Bra021783.1-P	Field mustard	mitochondrion	44.03	45.27
CDY15359	Canola	cytosol, plastid	44.78	45.23
CDY19132	Canola	mitochondrion	43.28	44.27
AT2G19630.1	Thale cress	cytosol, nucleus, plasma membrane	32.59	44.11
CDY60959	Canola	cytosol, mitochondrion, plastid	30.35	44.04
CDY15327	Canola	cytosol	42.04	43.9
Bra023809.1-P	Field mustard	mitochondrion	35.32	43.29
CDY18160	Canola	cytosol	19.15	43.26
CDY51358	Canola	cytosol	39.8	42.33
Bra039989.1-P	Field mustard	cytosol	42.29	42.18
CDY15358	Canola	cytosol, extracellular, plastid	14.43	41.43
AT1G46984.1	Thale cress	mitochondrion	36.57	39.73
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	12.44	39.68
Bra021786.1-P	Field mustard	mitochondrion	35.82	39.02
CDX97874	Canola	extracellular	25.37	38.06
Bra021789.1-P	Field mustard	cytosol	47.26	37.25
AT3G61340.2	Thale cress	cytosol	39.05	36.09
AT3G49450.1	Thale cress	cytosol	35.57	35.75
AT3G47020.1	Thale cress	cytosol	27.11	34.82
AT1G46912.1	Thale cress	plasma membrane	24.38	31.41
AT1G53790.2	Thale cress	cytosol	34.83	30.37
AT3G47030.1	Thale cress	mitochondrion, plasma membrane, plastid	31.09	30.19
CDY19131	Canola	mitochondrion	44.53	30.08
Bra021780.1-P	Field mustard	mitochondrion	44.53	30.08
AT1G46840.1	Thale cress	cytosol	34.83	29.47
CDY15353	Canola	cytosol	35.57	27.77

Protein Annotations

MapMan:35.1	EntrezGene:821980	ProteinID:AEE76839.1	ArrayExpress:AT3G23960	EnsemblPlantsGene:AT3G23960	RefSeq:AT3G23960
TAIR:AT3G23960	RefSeq:AT3G23960-TAIR-G	EnsemblPlants:AT3G23960.1	TAIR:AT3G23960.1	Unigene:At.53464	ProteinID:BAB03014.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	RefSeq:NP_189038.1	PFAM:PF00646	PFAM:PF08268
PO:PO:0009047	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	UniProt:Q9LIR1	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI00000A82D4	:	:	:	:

Description

Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]

Coordinates

chr3:+:8657736..8658980

Molecular Weight (calculated)

46436.5 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.234

Length

402 amino acids

Sequence
(BLAST)

001: MRSRQLHNVS EDRETLSRRN KRSKTSLNGH IPIDLLIEIF LKLPVKSIAT CRSVSKFWTY VLGRQDFTEL FLTKSSSRPQ LLFACANDNG YFFFSSNQPQ
101: NLDENSSPIA AYPLTHVPKS RDLGPPINGL VSLRGERILK GRIRPVDVSI IYNPSTGESL TLPKTNMTRK KIYTVTSFLG YDPIEKQYKV LSMNMSYEKH
201: PKCEGYQVLT LGTGKLSWRM IKCCLNYQHP LKNSEICING VLYYLAMVNG SSWPTRAVVC FDIRSEMFNF MEVYRELSYT TTLINYNNGK LGMLMGQEAH
301: KTISGICRSF ELWVLEDTVK HEWSKHVYLL PPLWKDAVAN TRLYFAGMIG TSEIVLFRPD EPLCVFYYNI DRNTIKRVGI RGLEAFKYFR IFLNHVENVK
401: LF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.