Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 31.95 | 33.67 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 42.81 | 32.37 |
| AT2G31470.1 | Thale cress | cytosol | 33.55 | 27.13 |
| AT3G23960.1 | Thale cress | cytosol | 34.82 | 27.11 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 33.55 | 26.79 |
| AT3G61340.2 | Thale cress | cytosol | 36.74 | 26.44 |
| AT3G49450.1 | Thale cress | cytosol | 32.27 | 25.25 |
| AT1G46984.1 | Thale cress | mitochondrion | 29.07 | 24.59 |
| AT1G53790.2 | Thale cress | cytosol | 35.78 | 24.3 |
| AT1G46912.1 | Thale cress | plasma membrane | 19.81 | 19.87 |
| AT1G46840.1 | Thale cress | cytosol | 28.43 | 18.74 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:823855 | ProteinID:AEE78233.1 | ArrayExpress:AT3G47020 | EnsemblPlantsGene:AT3G47020 |
| RefSeq:AT3G47020 | TAIR:AT3G47020 | RefSeq:AT3G47020-TAIR-G | EnsemblPlants:AT3G47020.1 | TAIR:AT3G47020.1 | Unigene:At.53809 |
| ProteinID:CAB61948.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_190286.1 | PFAM:PF00646 |
| PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF47 | UniProt:Q9SD71 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI00000A72B7 | : | : | : | : |
Description
Putative F-box protein At3g47020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD71]
Coordinates
chr3:+:17319862..17321077
Molecular Weight (calculated)
35861.3 Da
IEP (calculated)
8.390
GRAVY (calculated)
-0.143
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSQKQVTR PSNSRREYSK EIPIDLLIEI FSRLSTGDIA RCRCVSKIWS SVPRLRDFTE LFLKISSARP RILFTFLHNG MVPSYDNEIH APVRGFLCSK
101: ASVYNPSTGE CAYPYLELLG LWDILPVDAE NLAKKVCVPK VLLASEDFAC RVSTLGTEEV CWRMIQCSLP HRPFRDEICI DGVLYYLANC KGKLGILWPV
201: PSGDQSHEVT RSFVLRILED ANKLIWSRTV YTLSFNWKKL VNKSLYIVGM TSGGEIVLST RHLNYPFYIV YYNPVNNTAA KNEIQFGNIA NKKAENSRIY
301: TFIDHVENVE HMD
101: ASVYNPSTGE CAYPYLELLG LWDILPVDAE NLAKKVCVPK VLLASEDFAC RVSTLGTEEV CWRMIQCSLP HRPFRDEICI DGVLYYLANC KGKLGILWPV
201: PSGDQSHEVT RSFVLRILED ANKLIWSRTV YTLSFNWKKL VNKSLYIVGM TSGGEIVLST RHLNYPFYIV YYNPVNNTAA KNEIQFGNIA NKKAENSRIY
301: TFIDHVENVE HMD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.