Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G19630.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.22 | 47.81 |
| AT2G31470.1 | Thale cress | cytosol | 46.17 | 46.77 |
| AT3G23960.1 | Thale cress | cytosol | 46.43 | 45.27 |
| AT1G46984.1 | Thale cress | mitochondrion | 36.99 | 39.19 |
| AT3G61340.2 | Thale cress | cytosol | 41.84 | 37.7 |
| AT3G49450.1 | Thale cress | cytosol | 34.95 | 34.25 |
| AT1G46912.1 | Thale cress | plasma membrane | 26.79 | 33.65 |
| AT3G47020.1 | Thale cress | cytosol | 26.79 | 33.55 |
| AT1G53790.2 | Thale cress | cytosol | 39.29 | 33.41 |
| AT1G46840.1 | Thale cress | cytosol | 39.03 | 32.21 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 30.87 | 29.23 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:836714 | ProteinID:AED98114.1 | ArrayExpress:AT5G65850 | EnsemblPlantsGene:AT5G65850 |
| RefSeq:AT5G65850 | TAIR:AT5G65850 | RefSeq:AT5G65850-TAIR-G | EnsemblPlants:AT5G65850.1 | TAIR:AT5G65850.1 | Unigene:At.66727 |
| ProteinID:BAB11132.1 | EMBL:BT015075 | EMBL:BT015673 | ProteinID:CAA16676.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 |
| RefSeq:NP_201386.1 | PFAM:PF00646 | PFAM:PF08268 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9FHP3 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI00000AAB76 | : | : | : | : |
Description
F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
Coordinates
chr5:+:26346266..26347610
Molecular Weight (calculated)
45439.6 Da
IEP (calculated)
9.324
GRAVY (calculated)
-0.105
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.