Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29771 | Canola | cytosol, plastid | 44.44 | 39.64 |
| AT5G65850.1 | Thale cress | cytosol, mitochondrion | 47.81 | 36.22 |
| AT2G31470.1 | Thale cress | cytosol | 47.14 | 36.18 |
| CDY15344 | Canola | mitochondrion | 38.05 | 32.66 |
| AT3G23960.1 | Thale cress | cytosol | 44.11 | 32.59 |
| AT3G47020.1 | Thale cress | cytosol | 33.67 | 31.95 |
| Bra036902.1-P | Field mustard | cytosol | 43.43 | 31.54 |
| CDY29772 | Canola | cytosol | 42.76 | 31.13 |
| Bra036901.1-P | Field mustard | cytosol | 43.77 | 30.95 |
| AT1G46984.1 | Thale cress | mitochondrion | 37.71 | 30.27 |
| AT3G61340.2 | Thale cress | cytosol | 42.42 | 28.97 |
| AT3G49450.1 | Thale cress | cytosol | 34.01 | 25.25 |
| AT1G53790.2 | Thale cress | cytosol | 38.72 | 24.95 |
| AT3G47030.1 | Thale cress | mitochondrion, plasma membrane, plastid | 32.66 | 23.43 |
| AT1G46912.1 | Thale cress | plasma membrane | 24.58 | 23.4 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 44.78 | 23.13 |
| AT1G46840.1 | Thale cress | cytosol | 36.36 | 22.74 |
| Bra021777.1-P | Field mustard | cytosol | 44.44 | 14.43 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:816482 | ProteinID:AAD10161.1 | ProteinID:AEC06904.1 | ArrayExpress:AT2G19630 |
| EnsemblPlantsGene:AT2G19630 | RefSeq:AT2G19630 | TAIR:AT2G19630 | RefSeq:AT2G19630-TAIR-G | EnsemblPlants:AT2G19630.1 | TAIR:AT2G19630.1 |
| Unigene:At.66222 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_179553.1 |
| PFAM:PF00646 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF47 | UniProt:Q9ZUN0 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A6904 | : | : | : |
Description
Putative F-box protein At2g19630 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN0]
Coordinates
chr2:-:8490217..8491110
Molecular Weight (calculated)
34672.1 Da
IEP (calculated)
8.782
GRAVY (calculated)
-0.118
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.