CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15344	Canola	mitochondrion	40.0	66.47
CDY29771	Canola	cytosol, plastid	29.22	50.45
CDY15357	Canola	cytosol, nucleus, plastid	4.35	45.45
CDY65287	Canola	cytosol	7.65	45.36
CDY15326	Canola	cytosol	10.09	45.31
AT2G19630.1	Thale cress	cytosol, nucleus, plasma membrane	23.13	44.78
CDY15332	Canola	cytosol	30.26	44.62
CDY60961	Canola	cytosol	30.78	44.58
CDY29772	Canola	cytosol	31.48	44.36
CDY15358	Canola	cytosol, extracellular, plastid	10.78	44.29
CDX79454	Canola	cytosol	23.13	44.19
CDY46037	Canola	extracellular	10.43	44.12
CDY70182	Canola	extracellular	10.43	44.12
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	23.48	43.97
CDY12239	Canola	mitochondrion	21.22	43.73
CDY15336	Canola	plastid	29.74	43.62
CDY15324	Canola	cytosol	29.04	43.6
CDY15359	Canola	cytosol, plastid	30.09	43.47
CDY19137	Canola	cytosol, mitochondrion, plastid	30.43	43.1
CDY15352	Canola	mitochondrion	30.26	43.07
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	9.22	42.06
CDY12627	Canola	cytosol	29.04	41.96
CDY19134	Canola	mitochondrion	27.65	41.62
CDY66546	Canola	cytosol	18.09	41.6
CDY72470	Canola	golgi, nucleus, plasma membrane	28.0	41.39
CDY15327	Canola	cytosol	27.65	41.3
CDY52273	Canola	cytosol, plastid	21.39	41.28
CDY60959	Canola	cytosol, mitochondrion, plastid	19.65	40.79
CDY67859	Canola	cytosol, mitochondrion	26.61	40.48
CDY19132	Canola	mitochondrion	27.65	40.46
CDY12626	Canola	cytosol	26.26	40.37
CDY15333	Canola	mitochondrion	26.78	40.1
CDY42088	Canola	cytosol	28.52	40.1
CDY42089	Canola	cytosol	28.35	39.95
CDX98860	Canola	cytosol	28.0	39.85
CDY42092	Canola	cytosol	9.74	39.72
CDX97551	Canola	mitochondrion	26.96	39.54
CDY66545	Canola	cytosol, peroxisome, plastid	25.22	39.51
CDY19088	Canola	cytosol	27.83	39.51
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.65	39.26
CDX70134	Canola	cytosol	26.78	39.09
CDX79453	Canola	plastid	25.74	38.95
CDY42091	Canola	mitochondrion	20.7	38.51
CDY51358	Canola	cytosol	25.22	38.36
CDY65288	Canola	mitochondrion	18.26	38.04
Bra021777.1-P	Field mustard	cytosol	60.52	38.03
CDY18160	Canola	cytosol	11.65	37.64
CDY67625	Canola	mitochondrion	16.0	35.8
CDY31173	Canola	cytosol, mitochondrion	24.52	35.43
CDY00206	Canola	nucleus	11.13	35.36
CDX83262	Canola	cytosol, mitochondrion	24.35	35.18
CDY70684	Canola	cytosol	12.17	34.15
CDY30662	Canola	extracellular, mitochondrion	8.17	34.06
CDY08137	Canola	cytosol	23.3	32.84
CDY05937	Canola	cytosol	19.13	32.54
CDY08136	Canola	cytosol	22.78	32.35
CDY10678	Canola	cytosol	21.57	32.12
CDY72410	Canola	cytosol	20.7	32.08
CDY30661	Canola	cytosol	12.52	31.03
CDX97874	Canola	extracellular	14.43	30.97
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	23.65	30.77
CDY19131	Canola	mitochondrion	29.39	28.4
CDY29942	Canola	cytosol	14.61	28.28
CDY52272	Canola	cytosol	1.04	27.27
CDY12260	Canola	cytosol	15.13	27.27
CDY12259	Canola	cytosol	15.3	27.16
CDY15353	Canola	cytosol	20.87	23.3
CDY26564	Canola	mitochondrion	17.39	21.83
CDY15999	Canola	cytosol, mitochondrion	20.7	18.48
CDY15342	Canola	cytosol	4.52	11.4

Protein Annotations

EnsemblPlants:CDY19127	EnsemblPlantsGene:GSBRNA2T00006408001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF47	PFAM:PF00646	PFAM:PF08268	ProteinID:CDY19127	ProteinID:CDY19127.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF40FA	UniProt:A0A078G2A5	MapMan:35.1	:

Description

BnaA04g18670DBnaA04g18670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2A5]

Coordinates

chrLK032092:-:397689..402323

Molecular Weight (calculated)

65405.8 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.051

Length

575 amino acids

Sequence
(BLAST)

001: MIICGRGPHI RGRCINGVFF IKVDMFFTEG TMINYNGKLG LLWSEGWLSR SSTCVNLCVL EDIGKQEWSE HVYVLSALWE DIVGSASLSF VGMTQTNEIV
101: MRSLAYPPSP LYLFYFNSER NTVVRVAIQG MDVSEYDRVH IFLDHLENVK LIASAMKTRR RNLSGNDLTT TRRNTRSKTL ENGRDNSLPF PVDLFMEIFS
201: RLPVKSIAIC RCVSKTWSSV LRRQDFTELF LSRSRTLPKL LLAYQKDGDL FFFSAPQPQN PEENSSPVVA TYRMKLSFDA YFRNGAFGIN GLDHGLVGLS
301: GRTHSVICNP STGQSLPFTR AKTRSMSLFG YDPIDKQFSG LLNVVAEEYQ VLTLGTENPS WRTIDCGCIL SYYSQHVRQK CINGVLHYLS TDMSTETTVL
401: VCFDVRSEKF SFVKVKTFVT EGTMINYDGK LVHIFLDHVD NVELIVNSVI LTMVNYNGKL GFLLSGESGY VYERSTSVNL WVLEDTDKQE WSERTFVLPA
501: LWEDIVGSVR LGFVGMTRTN EIVMRPLGLP GRPFHLIYFN IERNTVVRVS IQGMDVSEYD HVHIFLDHVE NVKLL

Best Arabidopsis Sequence Match ( AT5G65850.1 )
(BLAST)

001: MRTLRRNVTE NRLTISRRRT EKKTSPNKTE KSVQIPVDII IEILLRLPAK SIATCRCVSK LWISVICRQD FTELFLTRSL HRPQLLFCCK KDGNLFFFSS
101: PQLQNPYENS SAISLKNFSL CYKISRPVNG LICFKRKEMN ETVTVICNPS TGHTLSLPKP MKTSIGPSRF FVYEPIQKQF KVLLSYKSDE HQVLTLGTGE
201: LSWRIIECSM PHILGMSEIC INGVLYYPAI NLSSGDYIIV CFDVRSEKFR FITVMEEFIK AAHDGTLINY NGKLASLVSE RYCFVDGRSK SIELWVLQDA
301: EKKEWSKHTY VLPAWWQHRI GTLNLRFVGV TRTNEIMLSP CYQTVPFDVY YFNIERKTMM SVAIQGMEAF QGHLVFTYLD HVENVKLLHN MF

Arabidopsis Description

F-box protein At5g65850 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHP3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.