Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70684 | Canola | cytosol | 63.97 | 92.68 |
| Bra033850.1-P | Field mustard | cytosol | 74.07 | 78.57 |
| CDX83262 | Canola | cytosol, mitochondrion | 68.69 | 51.26 |
| CDY31173 | Canola | cytosol, mitochondrion | 67.68 | 50.5 |
| AT1G46912.1 | Thale cress | plasma membrane | 42.42 | 40.38 |
| CDY67625 | Canola | mitochondrion | 33.0 | 38.13 |
| CDY65288 | Canola | mitochondrion | 32.66 | 35.14 |
| CDY10678 | Canola | cytosol | 45.45 | 34.97 |
| CDY70182 | Canola | extracellular | 15.82 | 34.56 |
| CDY46037 | Canola | extracellular | 15.82 | 34.56 |
| CDY15357 | Canola | cytosol, nucleus, plastid | 6.06 | 32.73 |
| CDY15326 | Canola | cytosol | 13.13 | 30.47 |
| AT1G46984.1 | Thale cress | mitochondrion | 37.37 | 30.0 |
| CDY42092 | Canola | cytosol | 13.8 | 29.08 |
| CDY18160 | Canola | cytosol | 16.84 | 28.09 |
| CDY52272 | Canola | cytosol | 2.02 | 27.27 |
| CDY12626 | Canola | cytosol | 34.34 | 27.27 |
| CDY12239 | Canola | mitochondrion | 25.59 | 27.24 |
| CDY30662 | Canola | extracellular, mitochondrion | 12.46 | 26.81 |
| CDY67859 | Canola | cytosol, mitochondrion | 34.01 | 26.72 |
| CDY05937 | Canola | cytosol | 30.3 | 26.63 |
| CDY72410 | Canola | cytosol | 32.66 | 26.15 |
| CDX98860 | Canola | cytosol | 35.35 | 25.99 |
| CDY19088 | Canola | cytosol | 35.35 | 25.93 |
| CDX70134 | Canola | cytosol | 34.34 | 25.89 |
| CDY08137 | Canola | cytosol | 35.02 | 25.49 |
| AT1G46840.1 | Thale cress | cytosol | 40.74 | 25.47 |
| CDX97874 | Canola | extracellular | 22.9 | 25.37 |
| CDY42091 | Canola | mitochondrion | 26.26 | 25.24 |
| CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 34.34 | 25.19 |
| CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 25.93 | 25.08 |
| CDY42089 | Canola | cytosol | 34.34 | 25.0 |
| CDY08136 | Canola | cytosol | 34.01 | 24.94 |
| CDY15336 | Canola | plastid | 32.66 | 24.74 |
| CDY12627 | Canola | cytosol | 33.0 | 24.62 |
| CDY42088 | Canola | cytosol | 33.67 | 24.45 |
| CDY15332 | Canola | cytosol | 31.65 | 24.1 |
| CDY15327 | Canola | cytosol | 30.98 | 23.9 |
| CDY19134 | Canola | mitochondrion | 30.64 | 23.82 |
| CDY66545 | Canola | cytosol, peroxisome, plastid | 29.29 | 23.71 |
| CDY15333 | Canola | mitochondrion | 30.64 | 23.7 |
| CDY15324 | Canola | cytosol | 30.3 | 23.5 |
| CDY60961 | Canola | cytosol | 31.31 | 23.43 |
| CDY29771 | Canola | cytosol, plastid | 26.26 | 23.42 |
| CDX79454 | Canola | cytosol | 23.23 | 22.92 |
| CDY19132 | Canola | mitochondrion | 30.3 | 22.9 |
| CDY52273 | Canola | cytosol, plastid | 22.9 | 22.82 |
| CDY15352 | Canola | mitochondrion | 30.98 | 22.77 |
| CDX97551 | Canola | mitochondrion | 29.97 | 22.7 |
| CDY19137 | Canola | cytosol, mitochondrion, plastid | 30.98 | 22.66 |
| CDY15359 | Canola | cytosol, plastid | 30.3 | 22.61 |
| CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 33.33 | 22.4 |
| CDY51358 | Canola | cytosol | 28.28 | 22.22 |
| CDX79453 | Canola | plastid | 27.95 | 21.84 |
| CDY15344 | Canola | mitochondrion | 24.58 | 21.1 |
| CDY29772 | Canola | cytosol | 28.96 | 21.08 |
| CDY72470 | Canola | golgi, nucleus, plasma membrane | 26.6 | 20.31 |
| CDY30661 | Canola | cytosol | 15.15 | 19.4 |
| CDY12259 | Canola | cytosol | 19.87 | 18.21 |
| CDY15353 | Canola | cytosol | 31.31 | 18.06 |
| CDY66546 | Canola | cytosol | 15.15 | 18.0 |
| CDY12260 | Canola | cytosol | 19.19 | 17.87 |
| CDY60959 | Canola | cytosol, mitochondrion, plastid | 15.49 | 16.61 |
| CDY19131 | Canola | mitochondrion | 30.64 | 15.29 |
| CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 28.28 | 14.61 |
| CDY26564 | Canola | mitochondrion | 19.53 | 12.66 |
| CDY15342 | Canola | cytosol | 8.42 | 10.96 |
| CDY00206 | Canola | nucleus | 6.4 | 10.5 |
| CDY15999 | Canola | cytosol, mitochondrion | 21.55 | 9.94 |
| CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 2.69 | 6.35 |
| CDY65287 | Canola | cytosol | 1.68 | 5.15 |
| CDY15358 | Canola | cytosol, extracellular, plastid | 2.36 | 5.0 |
Protein Annotations
| EnsemblPlants:CDY29942 | EnsemblPlantsGene:GSBRNA2T00044455001 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| PFAM:PF08268 | ProteinID:CDY29942 | ProteinID:CDY29942.1 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EEC7BD | UniProt:A0A078GXK0 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC05g28940DBnaC05g28940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXK0]
Coordinates
chrLK032246:-:502381..503577
Molecular Weight (calculated)
35040.3 Da
IEP (calculated)
9.188
GRAVY (calculated)
-0.193
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQEKYNPQS RFHEIIPDMF VNSATSSVHV RIRRQVAFLL VPSASKYCNS RLSYGFLWRL KVHLPIVIAK NNDLRSFLGY DPIENQLKVL CMAVAKYNQQ
101: TNSREHKVLT LGKGKPSWRN IECLFPHFPE NYKNGICING ILYYIARSNL NTVIACFDVK YEKFRFIQID EESSILTWFL TLINYKGKLA ALVFDQSLHD
201: QLWVLDDPEN EKWSKHIFHL PTAAFVVIRS IWATDSGEIV WAPSRWTYPF YVFYYNMERQ SVRRFEIKGI EEKALMGHYR PEAIFTFTNH IENVMFL
101: TNSREHKVLT LGKGKPSWRN IECLFPHFPE NYKNGICING ILYYIARSNL NTVIACFDVK YEKFRFIQID EESSILTWFL TLINYKGKLA ALVFDQSLHD
201: QLWVLDDPEN EKWSKHIFHL PTAAFVVIRS IWATDSGEIV WAPSRWTYPF YVFYYNMERQ SVRRFEIKGI EEKALMGHYR PEAIFTFTNH IENVMFL
001: MSLCVETMGF HTSTSRFCGI VPHKVIVTAA SFVHLQKWQQ VVLLLIPSTS NFWKELKCCS KRVSYGLFWK LDITSPKVGT GNVILKCFFG YDPIRKQFKV
101: LCWTNFYRQG RTSNEQYQVL TLGTGELLWR KIECLFPHEP HKDKNGICIN GVLYYIAWLK NRCYDGTEII VCFDVRSEKF SFIEIEIKEV KGSILLEYKG
201: KLGVLMWSVY SYSAELWVLD DTKNVKWSKY KFVLPYTASE EVKKSIWATD SGELVWTLSS PLSHPLYVYY YNLESQSVRE VEIKGMKDKV SRDIGNSLVT
301: FTNYVENLMF LQ
101: LCWTNFYRQG RTSNEQYQVL TLGTGELLWR KIECLFPHEP HKDKNGICIN GVLYYIAWLK NRCYDGTEII VCFDVRSEKF SFIEIEIKEV KGSILLEYKG
201: KLGVLMWSVY SYSAELWVLD DTKNVKWSKY KFVLPYTASE EVKKSIWATD SGELVWTLSS PLSHPLYVYY YNLESQSVRE VEIKGMKDKV SRDIGNSLVT
301: FTNYVENLMF LQ
Arabidopsis Description
F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:Q9C628]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.