CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15326	Canola	cytosol	29.85	62.5
CDY52272	Canola	cytosol	4.85	59.09
CDY51358	Canola	cytosol	79.85	56.61
CDY18160	Canola	cytosol	36.94	55.62
CDY15357	Canola	cytosol, nucleus, plastid	11.19	54.55
CDY46037	Canola	extracellular	21.64	42.65
CDY70182	Canola	extracellular	21.64	42.65
CDY42092	Canola	cytosol	21.27	40.43
CDY15327	Canola	cytosol	54.85	38.18
CDY15336	Canola	plastid	54.1	36.99
CDY15332	Canola	cytosol	52.61	36.15
CDY15324	Canola	cytosol	51.49	36.03
CDY15333	Canola	mitochondrion	48.88	34.11
CDY15352	Canola	mitochondrion	51.12	33.91
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	38.81	33.88
CDY19134	Canola	mitochondrion	48.13	33.77
CDY19137	Canola	cytosol, mitochondrion, plastid	50.75	33.5
CDY67625	Canola	mitochondrion	32.09	33.46
CDX97551	Canola	mitochondrion	48.13	32.91
CDY19132	Canola	mitochondrion	48.13	32.82
CDY15359	Canola	cytosol, plastid	48.13	32.41
CDY60961	Canola	cytosol	47.39	31.99
CDY65288	Canola	mitochondrion	32.46	31.52
CDY30662	Canola	extracellular, mitochondrion	15.67	30.43
CDY60959	Canola	cytosol, mitochondrion, plastid	30.97	29.96
CDY70684	Canola	cytosol	21.27	27.8
CDY52273	Canola	cytosol, plastid	30.6	27.52
CDY15353	Canola	cytosol	50.75	26.41
AT3G23960.1	Thale cress	cytosol	38.06	25.37
CDX79454	Canola	cytosol	27.99	24.92
CDY12626	Canola	cytosol	34.7	24.87
CDY12239	Canola	mitochondrion	25.75	24.73
CDY42089	Canola	cytosol	37.31	24.51
CDY19088	Canola	cytosol	36.94	24.44
CDY67859	Canola	cytosol, mitochondrion	34.33	24.34
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	36.19	23.95
CDY19131	Canola	mitochondrion	52.24	23.53
CDY12627	Canola	cytosol	34.33	23.12
CDX70134	Canola	cytosol	33.96	23.1
CDY29942	Canola	cytosol	25.37	22.9
CDY72470	Canola	golgi, nucleus, plasma membrane	33.21	22.88
CDX98860	Canola	cytosol	34.33	22.77
CDY72410	Canola	cytosol	30.97	22.37
CDY42091	Canola	mitochondrion	25.37	22.01
CDY42088	Canola	cytosol	32.84	21.52
CDY08136	Canola	cytosol	32.46	21.48
CDY08137	Canola	cytosol	32.46	21.32
CDY05937	Canola	cytosol	26.12	20.71
CDY29772	Canola	cytosol	30.97	20.34
CDX83262	Canola	cytosol, mitochondrion	29.85	20.1
CDY31173	Canola	cytosol, mitochondrion	29.48	19.85
CDY66545	Canola	cytosol, peroxisome, plastid	26.87	19.62
CDY15344	Canola	mitochondrion	25.0	19.36
CDY29771	Canola	cytosol, plastid	23.51	18.92
CDY10678	Canola	cytosol	25.75	17.88
CDX79453	Canola	plastid	25.0	17.63
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	27.24	16.52
CDY66546	Canola	cytosol	14.55	15.6
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	30.97	14.43
CDY26564	Canola	mitochondrion	23.88	13.97
CDY12259	Canola	cytosol	15.3	12.65
CDY12260	Canola	cytosol	14.93	12.54
CDY00206	Canola	nucleus	7.46	11.05
CDY15342	Canola	cytosol	8.58	10.09
CDY15999	Canola	cytosol, mitochondrion	23.88	9.94
CDY30661	Canola	cytosol	6.72	7.76
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	2.24	4.76
CDY15358	Canola	cytosol, extracellular, plastid	2.24	4.29
CDY65287	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX97874	EnsemblPlantsGene:GSBRNA2T00105209001	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10
PFAM:PF08268	ProteinID:CDX97874	ProteinID:CDX97874.1	TIGRFAMs:TIGR01640	UniParc:UPI0004EF3448	MapMan:35.1

Description

BnaC04g40650D

Coordinates

chrLK031901:-:1169111..1169978

Molecular Weight (calculated)

30388.3 Da

IEP (calculated)

8.252

GRAVY (calculated)

0.253

Length

268 amino acids

Sequence
(BLAST)

001: MILIGNELQL YVPLMCNPST GQFITLPKLK SGKSCGVESY LGYEPVANEL KVFSMECSRV SGVSNVARKW ICISGVIYYA ASSHSYSLIS MVACFDLRSE
101: KLSFIKFMET FSKEMHHSAT IVNYNGKLGL LMSRDFGLVH RANASFELWV LQDAAKHEWS KLVFVLPPLW KDVVVDTMCI SGMVGKNEIV FSPIYQRDPF
201: YVIYYNVESK TITKVGIQGL EAFQGKSLNI YLNYVESLLV PVKAIKENLR TLCFWVEKDY LFLVFPLA

Best Arabidopsis Sequence Match ( AT2G31470.1 )
(BLAST)

001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SGTLMIVCFD VRFEKFSYIK ILKPTTTLIS YNGKLASLVW EGPSYICGKR FEMWVLGDPE
301: KHEWLKHTYE LRPRWQNVLG EDLLIFAGMT GTNEIVLSPK YPSHPFYVFY YNLERNTIRR VEIQGMGAFK VNEDYIFLDH VEDVKLI

Arabidopsis Description

DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.