CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019597.1-P	Field mustard	nucleus	100.0	100.0
CDY15358	Canola	cytosol, extracellular, plastid	29.83	38.57
CDY65287	Canola	cytosol	19.89	37.11
CDY66546	Canola	cytosol	38.12	27.6
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	18.23	26.19
CDY30661	Canola	cytosol	29.83	23.28
CDY15344	Canola	mitochondrion	41.44	21.68
CDY60959	Canola	cytosol, mitochondrion, plastid	32.6	21.3
CDY12259	Canola	cytosol	35.91	20.06
CDY05937	Canola	cytosol	35.36	18.93
CDX98860	Canola	cytosol	41.99	18.81
CDY12260	Canola	cytosol	33.15	18.81
CDY66545	Canola	cytosol, peroxisome, plastid	37.57	18.53
CDY08137	Canola	cytosol	40.88	18.14
CDY08136	Canola	cytosol	40.33	18.02
CDY15327	Canola	cytosol	38.12	17.92
CDX70134	Canola	cytosol	38.67	17.77
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.23	17.53
CDY42088	Canola	cytosol	39.23	17.36
CDY10678	Canola	cytosol	37.02	17.36
CDY72470	Canola	golgi, nucleus, plasma membrane	37.02	17.22
CDY15333	Canola	mitochondrion	36.46	17.19
CDY52273	Canola	cytosol, plastid	27.62	16.78
CDY72410	Canola	cytosol	34.25	16.71
CDY31173	Canola	cytosol, mitochondrion	35.91	16.33
CDY15336	Canola	plastid	35.36	16.33
CDY19088	Canola	cytosol	36.46	16.3
CDY19134	Canola	mitochondrion	34.25	16.23
CDY15332	Canola	cytosol	34.81	16.15
CDY29772	Canola	cytosol	35.91	15.93
CDY51358	Canola	cytosol	33.15	15.87
CDX83262	Canola	cytosol, mitochondrion	34.81	15.83
CDY12627	Canola	cytosol	34.81	15.83
CDX79453	Canola	plastid	33.15	15.79
CDY19137	Canola	cytosol, mitochondrion, plastid	35.36	15.76
CDY42089	Canola	cytosol	35.36	15.69
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	26.52	15.64
CDX97551	Canola	mitochondrion	33.7	15.56
CDY19132	Canola	mitochondrion	33.7	15.52
CDY15324	Canola	cytosol	32.6	15.4
CDY60961	Canola	cytosol	33.15	15.11
CDY12626	Canola	cytosol	30.94	14.97
CDY15352	Canola	mitochondrion	33.15	14.85
CDY15359	Canola	cytosol, plastid	32.6	14.82
CDY67859	Canola	cytosol, mitochondrion	30.39	14.55
CDY42091	Canola	mitochondrion	23.76	13.92
CDY08200	Canola	cytosol, golgi, mitochondrion, plasma membrane	30.94	12.67
CDY29771	Canola	cytosol, plastid	20.99	11.41
CDX79454	Canola	cytosol	18.78	11.3
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	35.36	11.13
CDY67625	Canola	mitochondrion	15.47	10.89
CDY19131	Canola	mitochondrion	35.36	10.76
CDY12239	Canola	mitochondrion	16.02	10.39
CDY65288	Canola	mitochondrion	13.26	8.7
CDY15353	Canola	cytosol	23.2	8.16
CDY26564	Canola	mitochondrion	20.44	8.08
CDX97874	Canola	extracellular	11.05	7.46
CDY15999	Canola	cytosol, mitochondrion	24.31	6.83
CDY29942	Canola	cytosol	10.5	6.4
CDY46037	Canola	extracellular	1.66	2.21
CDY70182	Canola	extracellular	1.66	2.21
CDY15357	Canola	cytosol, nucleus, plastid	0.55	1.82
CDY30662	Canola	extracellular, mitochondrion	1.1	1.45
CDY15342	Canola	cytosol	1.66	1.32
CDY18160	Canola	cytosol	1.1	1.12
CDY15326	Canola	cytosol	0.55	0.78
CDY70684	Canola	cytosol	0.55	0.49
CDY52272	Canola	cytosol	0.0	0.0
CDY42092	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlants:CDY00206	ProteinID:CDY00206	ProteinID:CDY00206.1	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00109742001
InterPro:IPR001810	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253EF75	:	:	:

Description

BnaA06g21070D

Coordinates

chrLK031917:-:131958..132503

Molecular Weight (calculated)

20821.3 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.525

Length

181 amino acids

Sequence
(BLAST)

001: MRKQQKHVSK TANPKTRSVE NSESIPADLI FEIFSRLTAK SLSRFRCVSK EWASIFCSRN FSHSFLTRSS ARPRLLFTFH VDGKLFSYSA PQPRNPDQNH
101: MPIPTRMGSF LIHRPDSGLI CPSDMWSKRG CNDSKMIMIC NPSTGQFKKL PAARTRRVHV RTYLGHDPIK KEYKLLCMSL S

Best Arabidopsis Sequence Match ( AT3G49450.1 )
(BLAST)

001: MSAMMKKRKR KVSKENVALT ISSSVGEYGE NSGTLPTDLM VEILSRVPAK SAARFRCVSN DWNSLLRSPY LTNLFLKRSS ARPHLLITFQ AEGKWSFFSS
101: PEYLISDQNS NLVVVDNHMD VPKDYSFGVC VPVCGLMCTS NEWVLSRKRD ARMMICNPST GQFKSLPKVR SCRGNVITYI GYNPIEKQYK VLCMTIREKP
201: FKFKAEEHQV LTLGTGKLKW RMLECSVDHY PYYHGSICIN GVLFYLAMKS ESKEYMTVSF HMKDENFMFI PNQDLLSTLI NYKGRLGGIR HKSFGFMDGG
301: DVGFELWILD VVNQEWIRSI HVLPPMWKDV VGETRVYFVG IIGSCEVVFS PFVKSNPFYI FHLDMKSNSI TRVEIKGTGP LEGQAVYTFV NHIENVNLIM

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G49450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.