CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol

Predictor Summary:

plastid 1
plasma membrane 1
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30662	Canola	extracellular, mitochondrion	29.19	93.48
CDY30661	Canola	cytosol	47.74	90.95
AT1G53790.2	Thale cress	cytosol	50.0	47.94
CDY15357	Canola	cytosol, nucleus, plastid	5.2	41.82
CDY70182	Canola	extracellular	12.67	41.18
CDY46037	Canola	extracellular	12.67	41.18
CDX79454	Canola	cytosol	27.15	39.87
CDY12239	Canola	mitochondrion	24.43	38.71
CDY60955	Canola	cytosol, extracellular, plastid, vacuole	26.7	38.44
CDX98860	Canola	cytosol	34.39	37.62
CDY70684	Canola	cytosol	17.19	37.07
CDY67625	Canola	mitochondrion	21.49	36.97
CDY72470	Canola	golgi, nucleus, plasma membrane	32.35	36.76
CDY19134	Canola	mitochondrion	31.67	36.65
CDX70134	Canola	cytosol	32.58	36.55
CDY42089	Canola	cytosol	33.71	36.52
CDY31173	Canola	cytosol, mitochondrion	32.81	36.43
CDY67066	Canola	cytosol, mitochondrion, nucleus, peroxisome	33.03	36.05
CDX83262	Canola	cytosol, mitochondrion	32.35	35.93
CDY65288	Canola	mitochondrion	22.4	35.87
CDY15327	Canola	cytosol	31.22	35.84
CDY12626	Canola	cytosol	30.09	35.56
CDY05937	Canola	cytosol	27.15	35.5
CDY15336	Canola	plastid	31.45	35.46
CDY12627	Canola	cytosol	31.9	35.43
CDY19088	Canola	cytosol	32.35	35.31
CDY08136	Canola	cytosol	32.35	35.31
CDY60961	Canola	cytosol	31.67	35.26
CDY15324	Canola	cytosol	30.54	35.25
CDY52273	Canola	cytosol, plastid	23.76	35.23
CDY15359	Canola	cytosol, plastid	31.67	35.18
CDY15332	Canola	cytosol	31.0	35.13
CDY08137	Canola	cytosol	32.35	35.05
CDY15358	Canola	cytosol, extracellular, plastid	11.09	35.0
CDY15333	Canola	mitochondrion	30.32	34.9
CDY29771	Canola	cytosol, plastid	26.24	34.83
CDY18160	Canola	cytosol	14.03	34.83
CDY67859	Canola	cytosol, mitochondrion	29.64	34.66
CDY15352	Canola	mitochondrion	31.67	34.65
CDY15344	Canola	mitochondrion	26.92	34.39
CDY15326	Canola	cytosol	9.95	34.38
CDY42091	Canola	mitochondrion	23.98	34.3
CDY66546	Canola	cytosol	19.23	34.0
CDY19132	Canola	mitochondrion	30.09	33.84
CDY19137	Canola	cytosol, mitochondrion, plastid	31.0	33.74
CDX97551	Canola	mitochondrion	29.86	33.67
CDY72410	Canola	cytosol	28.05	33.42
CDY29942	Canola	cytosol	22.4	33.33
CDY42088	Canola	cytosol	30.77	33.25
CDY66545	Canola	cytosol, peroxisome, plastid	27.38	32.97
CDX79453	Canola	plastid	28.05	32.63
CDY42092	Canola	cytosol	10.41	32.62
CDY10678	Canola	cytosol	28.28	32.38
CDY52272	Canola	cytosol	1.58	31.82
CDY29772	Canola	cytosol	28.73	31.13
CDY00206	Canola	nucleus	12.67	30.94
CDY51358	Canola	cytosol	26.02	30.42
CDY71858	Canola	cytosol, mitochondrion, nucleus, plastid	8.6	30.16
CDY60959	Canola	cytosol, mitochondrion, plastid	18.78	29.96
CDY65287	Canola	cytosol	6.56	29.9
CDX97874	Canola	extracellular	16.52	27.24
CDY12259	Canola	cytosol	19.23	26.23
CDY12260	Canola	cytosol	18.78	26.02
CDY19131	Canola	mitochondrion	32.13	23.87
CDY19127	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	30.77	23.65
CDY15353	Canola	cytosol	24.66	21.16
CDY26564	Canola	mitochondrion	18.78	18.12
CDY15999	Canola	cytosol, mitochondrion	21.49	14.75
CDY15342	Canola	cytosol	6.33	12.28

Protein Annotations

EnsemblPlants:CDY08200	EnsemblPlantsGene:GSBRNA2T00125505001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF47
PFAM:PF00646	PFAM:PF08268	ProteinID:CDY08200	ProteinID:CDY08200.1	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EE9CCA	UniProt:A0A078F143	MapMan:35.1	:	:

Description

BnaA05g14190DBnaA05g14190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F143]

Coordinates

chrLK031984:+:723..2448

Molecular Weight (calculated)

50491.7 Da

IEP (calculated)

8.738

GRAVY (calculated)

0.010

Length

442 amino acids

Sequence
(BLAST)

001: MKNLRQLYLE AQGRQCPNLG IDLPLDLVME ILSRVPAKSI KRFCCVSRLW GYILGLPCFT ELFLTKSPCR PPLLLFTFEN KESIFFFSAP QPQNPGDDSS
101: LVPARYNVHR KHYPKDFSVR VGSPLGGFIC RQDKGKVDTI VVSNPVTGES IFLPEVKSKN INIQMIPFLG YDPINKQFKV LCVKFGDVPN TSDDHQILTL
201: GNNKKHLWRT TLCKPHYPKS NGICIDGILY YSSGFDLRTT RVSTIVCFDV RSEKFSFINI DHQCMFMTCA CTLINYKGKL GALQFTLSNL RCLVFWVLED
301: AGKCKWSKCV YTIPPLWNNI VGRSDLDIVG VTSGGEVVLA TMHLLHPFYI YYYNPKGNTF IRVLIRGLEG FVRARVYTSL DYAENLKHMT EYDKGVNTNI
401: YSLTEAISSQ LMHQYALLYI FIFKISFLLS HKICHCLTEE HV

Best Arabidopsis Sequence Match ( AT1G53790.2 )
(BLAST)

001: MVRDIVDDPL DEDDIALVKT YGLVPYSAPI KKVEKEIKEL TEKINDLCGI KESDTGLAPL SKQMMQEGQP LQVGYVSCFR YIPIDLLMDI FSRVPAKSIA
101: RFRCVSKLWE SILCRPDFKE LFMTMSSIRP PLLLFTFQDD DGNLFFFSSP HPQIPCNENT SLVPTRYHVQ HTTDSFSEIG SPLCGFICRR GKRNLDTMVI
201: CNPVTGESVS LPKVELKSIN TETRPYLGYD PVRKQLKVLC IKSDDIPNTC DEHQVLTLEN GNHLWRTIQC KPHYPKSDGI CIDGILYYTA GFDMRARVSM
301: VVCFDVRSEK FSFINIHVFM LMNDSCTLIN YKGKLGALQF TCLSPKRLRF WVLVNAEKNI WTKCIYALPP LWNNLVQHTE LAIVGMTDGG EVVLSQYCLI
401: YAFYIYYFNL ESKSLTRVQI QDVEMFKRTR VYTSLGYVEN FKLMTDYDRG FNTFSPQGRL F

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.