Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY66546 | Canola | cytosol | 90.72 | 35.2 |
CDY71858 | Canola | cytosol, mitochondrion, nucleus, plastid | 38.14 | 29.37 |
CDY15358 | Canola | cytosol, extracellular, plastid | 37.11 | 25.71 |
CDY66545 | Canola | cytosol, peroxisome, plastid | 91.75 | 24.25 |
Bra021702.1-P | Field mustard | cytosol, peroxisome, plastid | 98.97 | 24.06 |
CDY00206 | Canola | nucleus | 37.11 | 19.89 |
CDY29771 | Canola | cytosol, plastid | 45.36 | 13.21 |
CDY52273 | Canola | cytosol, plastid | 40.21 | 13.09 |
CDY15344 | Canola | mitochondrion | 46.39 | 13.01 |
CDY60959 | Canola | cytosol, mitochondrion, plastid | 37.11 | 13.0 |
CDY60955 | Canola | cytosol, extracellular, plastid, vacuole | 39.18 | 12.38 |
CDX79454 | Canola | cytosol | 38.14 | 12.29 |
CDY42091 | Canola | mitochondrion | 38.14 | 11.97 |
CDY12260 | Canola | cytosol | 39.18 | 11.91 |
CDY42088 | Canola | cytosol | 49.48 | 11.74 |
CDY12259 | Canola | cytosol | 39.18 | 11.73 |
AT2G31470.1 | Thale cress | cytosol | 45.36 | 11.37 |
CDX79453 | Canola | plastid | 44.33 | 11.32 |
CDY42089 | Canola | cytosol | 47.42 | 11.27 |
CDY30661 | Canola | cytosol | 26.8 | 11.21 |
CDY60961 | Canola | cytosol | 45.36 | 11.08 |
CDY15359 | Canola | cytosol, plastid | 45.36 | 11.06 |
CDY31173 | Canola | cytosol, mitochondrion | 44.33 | 10.8 |
CDX70134 | Canola | cytosol | 43.3 | 10.66 |
CDY05937 | Canola | cytosol | 37.11 | 10.65 |
CDY12239 | Canola | mitochondrion | 29.9 | 10.39 |
CDY51358 | Canola | cytosol | 40.21 | 10.32 |
CDX98860 | Canola | cytosol | 42.27 | 10.15 |
CDY12627 | Canola | cytosol | 41.24 | 10.05 |
CDY08137 | Canola | cytosol | 42.27 | 10.05 |
CDY72470 | Canola | golgi, nucleus, plasma membrane | 40.21 | 10.03 |
CDY19137 | Canola | cytosol, mitochondrion, plastid | 41.24 | 9.85 |
CDX83262 | Canola | cytosol, mitochondrion | 40.21 | 9.8 |
CDX97551 | Canola | mitochondrion | 39.18 | 9.69 |
CDY08136 | Canola | cytosol | 40.21 | 9.63 |
CDY10678 | Canola | cytosol | 38.14 | 9.59 |
CDY19134 | Canola | mitochondrion | 37.11 | 9.42 |
CDY15352 | Canola | mitochondrion | 39.18 | 9.41 |
CDY67066 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 39.18 | 9.38 |
CDY29772 | Canola | cytosol | 39.18 | 9.31 |
CDY15336 | Canola | plastid | 37.11 | 9.18 |
CDY72410 | Canola | cytosol | 35.05 | 9.16 |
CDY19088 | Canola | cytosol | 38.14 | 9.14 |
CDY15332 | Canola | cytosol | 36.08 | 8.97 |
CDY19132 | Canola | mitochondrion | 36.08 | 8.91 |
CDY15324 | Canola | cytosol | 35.05 | 8.88 |
CDY15333 | Canola | mitochondrion | 35.05 | 8.85 |
CDY15327 | Canola | cytosol | 34.02 | 8.57 |
CDY19127 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 45.36 | 7.65 |
CDY08200 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 29.9 | 6.56 |
CDY12626 | Canola | cytosol | 24.74 | 6.42 |
CDY67859 | Canola | cytosol, mitochondrion | 24.74 | 6.35 |
CDY19131 | Canola | mitochondrion | 38.14 | 6.22 |
CDY15999 | Canola | cytosol, mitochondrion | 30.93 | 4.66 |
CDY26564 | Canola | mitochondrion | 17.53 | 3.71 |
CDY15353 | Canola | cytosol | 15.46 | 2.91 |
CDY46037 | Canola | extracellular | 3.09 | 2.21 |
CDY70182 | Canola | extracellular | 3.09 | 2.21 |
CDY15357 | Canola | cytosol, nucleus, plastid | 1.03 | 1.82 |
CDY18160 | Canola | cytosol | 3.09 | 1.69 |
CDY29942 | Canola | cytosol | 5.15 | 1.68 |
CDY15326 | Canola | cytosol | 1.03 | 0.78 |
CDY30662 | Canola | extracellular, mitochondrion | 1.03 | 0.72 |
CDY70684 | Canola | cytosol | 0.0 | 0.0 |
CDY65288 | Canola | mitochondrion | 0.0 | 0.0 |
CDY67625 | Canola | mitochondrion | 0.0 | 0.0 |
CDX97874 | Canola | extracellular | 0.0 | 0.0 |
CDY52272 | Canola | cytosol | 0.0 | 0.0 |
CDY42092 | Canola | cytosol | 0.0 | 0.0 |
CDY15342 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:CDY65287 | EnsemblPlantsGene:GSBRNA2T00045532001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF47 | PFAM:PF00646 |
ProteinID:CDY65287 | ProteinID:CDY65287.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EDC5E3 | UniProt:A0A078JIW5 |
MapMan:35.1 | : | : | : | : | : |
Description
BnaAnng20350DBnaAnng20350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIW5]
Coordinates
chrLK034719:+:1921..2214
Molecular Weight (calculated)
11068.3 Da
IEP (calculated)
9.338
GRAVY (calculated)
-0.255
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MKSRRRNVSE GHNTILQCHS RTCTEEYSET IPHDLIIEIV SRLPTKSVAR CRCVSKLWSS LLVHPYFTET YLTRSSASPK ILFACVKDGK VSFYTSA
001: MKSRRQNVSV ARQTILGRDE NFEPIPIDLV IEIFSRSPVK SIARCRCVSK LWASILRLPY FTELYLTKSC ARPRLLFACQ KHRELFFFST PQPHNPNESS
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SECTWRGLVN FCWNDWYK
101: SPLAASFHMK IPFDGRFNII SPIGGLVFVR YEQILKGRKT PEFVSAICNP STGQSLTLPK PKTRKRIWGT SHFGYDPIEK QFKVLSMNIG DGVYKEHYVL
201: TLGTENLSWR RIECSIPHVH GSKGICINGV LYYRAKADMF SECTWRGLVN FCWNDWYK
Arabidopsis Description
DORF-box protein DOR [Source:UniProtKB/Swiss-Prot;Acc:Q5BPS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.